Evidence map›Paper›PMID 40167599›Full record

ArticleThe Journal of experimental medicine2025

Tumor cell heterogeneity drives spatial organization of the intratumoral immune response.

Miho Tanaka, Lotus Lum, Kenneth H Hu, Piyush Chaudhary, Savannah Hughes, Cecilia Ledezma-Soto, Bushra Samad, Daphne Superville, Kenneth Ng, Arun Chumber and 8 more

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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  11. SLC2A1Nature cell biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Miho TanakaDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-0905-9346
Lotus LumDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-4751-0764
Kenneth H HuDepartment of Immunology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-0294-0202
Piyush ChaudharyHuntsman Cancer Institute, University of Utah , Salt Lake City, UT, USA.ORCID 0009-0005-7839-3638
Savannah HughesHuntsman Cancer Institute, University of Utah , Salt Lake City, UT, USA.ORCID 0009-0007-3593-6756
Cecilia Ledezma-SotoDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0009-0005-2541-6031
Bushra SamadUCSF CoLabs, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-2893-0897
Daphne SupervilleDepartment of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-8317-8431
Kenneth NgDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0009-0006-7898-7994
Arun ChumberDivision of Hematology and Oncology, Department of Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0009-0004-8247-437X
Ciara BensonDivision of Hematology and Oncology, Department of Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-6258-7412
Zoe N AdamsDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0009-0004-5331-5804
Kelly KerstenCancer Metabolism and Microenvironment Program, NCI-designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute , LA Jolla, CA, USA.ORCID 0000-0001-7615-2594
Oscar A AguilarDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-7990-8745
Lawrence FongImmunotherapy Integrated Research Center, Fred Hutchinson Cancer Center , Seattle, WA, USA.ORCID 0000-0002-6428-428X
Alexis J CombesUCSF CoLabs, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-9110-6542
Matthew F KrummelImmunoX Initiative, University of California San Francisco , San Francisco, CA, USA.ORCID 0000-0001-7915-3533
Melissa Q ReevesHuntsman Cancer Institute, University of Utah , Salt Lake City, UT, USA.ORCID 0000-0002-4886-5164

Funding

The Tumor Microenvironment Niche of Type I conventional Dendritic CellsR01CA197363 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW F KRUMMEL · 2017 to 2026
$4.5M
From genomics to natural language processing: A protected environment for research computing in the health scienceS10OD021644 · OD · UNIVERSITY OF UTAH · PI CHEATHAM, THOMAS E. · 2017 to 2017
$494k
Evolutionary Trajectories of Tumors Following Resistance to Immune Checkpoint BlockadeR21CA264599 · NCI · UNIVERSITY OF UTAH · PI REEVES, MELISSA QUINO · 2021 to 2022
$411k
American Cancer Society IRG-21-131-01Cancer LeagueCancer Prevention and Research Institute of Texas RR230012Five For The FightHuntsman Cancer Institute Cancer Center P30CA040214NCI NIH HHS R01 CA197363NCI NIH HHS R21 CA264599NCI NIH HHS R21CA264599NIH HHS 1S10OD021644-01A1NIH HHS S10 OD021644Parker Institute for Cancer ImmunotherapySanford Burnham PrebysUniversity of California, San FranciscoUniversity of TexasV Foundation V2024-002
6 · The paper itself

Abstract

Intratumoral heterogeneity (ITH)-defined as genetic and cellular diversity within a tumor-is linked to failure of immunotherapy and an inferior anti-tumor immune response. We modeled heterogeneous tumors comprised of "hot" and "cold" tumor populations (giving rise to T cell-rich and T cell-poor tumors, respectively) and introduced fluorescent labels to enable precise spatial tracking. We found the cold tumor cell population exerted a "dominant cold" effect in mixed tumors. Strikingly, spatial analysis revealed that the tumor cells themselves created distinct local microenvironments within heterogeneous tumors: regions occupied by cold tumor cells showed pronounced immunosuppression, harboring increased CD206Hi macrophages and diminished local T cell function. This inferior T cell activity in cold regions persisted even after immunotherapy and mechanistically was mediated by CX3CL1 produced by the cold tumor cells. An immune cold tumor population within a heterogeneous tumor thus impairs tumor immunity on both a tumor-wide and a highly localized spatial scale.

Indexed as

NeoplasmsTumor MicroenvironmentAnimalsCell Line, TumorChemokine CX3CL1HumansImmunotherapyMacrophagesMiceMice, Inbred C57BLT-LymphocytesChemokine CX3CL1

Identifiers

PMID40167599
PMCPMC11960709

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.