Evidence map›Paper›PMID 40167212›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2025

Accurate enumeration of pathogen-specific and virtual memory CD8 T cells after infection.

Roger R Berton, Mohammad Heidarian, Shravan Kumar Kannan, Manan Shah, Noah S Butler, John T Harty, Vladimir P Badovinac

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Roger R BertonInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0003-1517-8541
Mohammad HeidarianDepartment of Pathology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0001-5050-140X
Shravan Kumar KannanInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0001-7862-4663
Manan ShahInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.
Noah S ButlerInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0002-1429-0796
John T HartyInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0001-7266-2802
Vladimir P BadovinacInterdisciplinary Graduate Program in Immunology, University of Iowa, 500 Newton Rd, 1020 ML, Iowa City, IA 52242, USA.ORCID 0000-0003-3180-2439

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Jon C.D. Houtman · 2000 to 2026
$70.0M
PREDOCTORAL TRAINING PROGRAM IN IMMUNOLOGYT32AI007485 · NIAID · UNIVERSITY OF IOWA · PI Kevin L Legge · 1995 to 2026
$5.4M
Memory CD8 T cell localization and protection from influenzaR01AI114543 · NIAID · UNIVERSITY OF IOWA · PI BADOVINAC, VLADIMIR P, HARTY, JOHN T · 2015 to 2024
$4.4M
Regulation of Plasmodium-specific CD4+ T CellsR01AI127481 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Noah Sullivan Butler · 2016 to 2026
$3.8M
Development and function of CD4+ memory T cells during malariaR01AI125446 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Noah Sullivan Butler · 2016 to 2026
$3.7M
Mechanisms and consequences of extrafollicular B cell activation during malariaR01AI167058 · NIAID · UNIVERSITY OF IOWA · PI BUTLER, NOAH SULLIVAN · 2021 to 2025
$3.2M
Immunity to Liver-stage malariaR01AI167847 · NIAID · UNIVERSITY OF IOWA · PI John T Harty · 2022 to 2026
$3.0M
Cellular and molecular mechanisms controlling sepsis-induced immunoparalyses stateR35GM134880 · NIGMS · UNIVERSITY OF IOWA · PI BADOVINAC, VLADIMIR P · 2020 to 2024
$1.9M
Regulating Pathogen-induced Protective and Pathogenic CD8 T cells in the CNSR21AI178159 · NIAID · UNIVERSITY OF IOWA · PI HARTY, JOHN T · 2023 to 2024
$414k
Holden Comprehensive Cancer CenterNCI NIH HHS P30 CA086862NCI NIH HHS P30CA086862NIAID NIH HHS R01 AI114543NIAID NIH HHS R01 AI125446NIAID NIH HHS R01 AI127481NIAID NIH HHS R01 AI167058NIAID NIH HHS R01 AI167847NIAID NIH HHS R21 AI178159NIAID NIH HHS T32 AI007485NIGMS NIH HHS R35 GM134880NIH HHS AI114543NIH HHS AI125446NIH HHS AI127481NIH HHS AI167058NIH HHS AI167847NIH HHS AI178159NIH HHS GM134880NIH HHS T32AI007485The University of IowaUniversity of Iowa and its National Cancer Institute P30CA086862University of Iowa Distinguished Scholar
6 · The paper itself

Abstract

Establishing the magnitude and kinetics of polyclonal Ag-specific CD8 T-cell responses, in addition to their functional fitness, is critical for evaluating a host's ability to respond to different kinds of infections and/or immunizations. To track CD8 T-cell responses during infection, a surrogate-activation-marker approach (CD8αloCD11ahi) is used to distinguish naïve and Ag-experienced effector/memory CD8 T cells in vivo. However, semidifferentiated virtual memory (Tvm) CD8 T cells have recently been identified in uninfected/unmanipulated mice that display a phenotype similar to Ag-experienced cells. Therefore, magnitude and breadth of CD8 T-cell responses may be overestimated when responses are profiled using only CD8α/CD11a markers. Thus, to precisely define and distinguish Tvm from pathogen-specific CD8 T cells during bacterial, parasitic, and viral infections, pathogen-specific sensor TCR-Tg cells were adoptively transferred prior to challenge. We demonstrate that Tvm CD8 T cells are found in CD8αloCD11ahi-defined Ag-experienced CD8 T cells but can be parsed out in infected host with their CD49d-CD44hiCD122hi expression pattern. However, this approach presents potential limitations as CD49d+ Ag-specific CD8 T cells can lose CD49d expression and adopt a Tvm-like phenotype depending on their Ag-stimulation history, age, and naïve CD8 T-cell precursor frequency before the infection. Importantly, Tvm cells contribute to the breadth of the CD8 T-cell response, and their contribution depends on type of infection, time after infection, and tissue examined. Thus, these data define limitations in our ability to resolve between pathogen/Ag-specific and Tvm CD8 T-cell responses during infection, a notion of direct relevance for experimental murine studies designed to follow CD8 T-cell responses in vivo.

Indexed as

CD8-Positive T-LymphocytesImmunologic MemoryMemory T CellsAdoptive TransferAnimalsCD8 AntigensLymphocyte ActivationMiceMice, Inbred C57BLMice, TransgenicCD8 AntigensAg-specific memoryCD8 T cellsintracellular pathogensvirtual memory

Identifiers

PMID40167212
PMCPMC12123210

What OpenQuestion holds

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LicenceTDM
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.