Evidence map›Paper›PMID 40164967›Full record

ArticleThe plant genome2025

Genetic and transcriptomic analysis of lentil seed imbibition and dormancy in relation to its domestication.

Azalea Guerra-García, Jana Balarynová, Petr Smykal, Eric J von Wettberg, Scott D Noble, Kirstin E Bett

Abstract read
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Azalea Guerra-GarcíaDepartamento de Biotecnología y Bioquímica, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, México.ORCID https://orcid.org/0000-0001-8132-467X
Jana BalarynováDepartment of Botany, Palacký University, Olomouc, Czech Republic.
Petr SmykalDepartment of Botany, Palacký University, Olomouc, Czech Republic.ORCID https://orcid.org/0000-0002-6117-8510
Eric J von WettbergDepartment of Agriculture, Landscape, and Environment, Gund Institute for the Environment, University of Vermont, Burlington, Vermont, USA.ORCID https://orcid.org/0000-0002-2724-0317
Scott D NobleDepartment of Mechanical Engineering, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Kirstin E BettDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID https://orcid.org/0000-0001-7959-6959

Funding

Genome Canada LSP18-16302Government of Saskatchewan 20200026Ministry of Education, Youth and Sports of the Czech Republic LUAUS25035Palacky University Grant Agency PrF-2023-001Palacky University Grant Agency PrF-2024-001Western Grains Research Foundation GC1903
6 · The paper itself

Abstract

Seed dormancy is an adaptation that delays germination to prevent the start of this process during unsuitable conditions. It is crucial in wild species but its loss was selected during crop domestication to ensure a fast and uniform germination. Water uptake, or imbibition, is the first step of germination. In the Fabaceae family, seeds have physical dormancy, in which seed coats are impermeable to water. We used an interspecific cross between an elite lentil line (Lens culinaris) and a wild lentil (L. orientalis) to investigate the genetic basis of imbibition capacity through quantitative trait locus (QTL) mapping and by using RNA from embryos and seed coats at different development stages, and phenotypic data of seed coat thickness (SCT) and proportion of imbibed seeds (PIS). Both characteristics were consistent throughout different years and locations, suggesting a hereditary component. QTL results suggest that they are each controlled by relatively few loci. Differentially expressed genes (DEGs) within the QTL were considered candidate genes. Two glycosyl-hydrolase genes (a β-glucosidase and a β-galactosidase), which degrade complex polysaccharides in the cell wall, were found among the candidate genes, and one of them had a positive correlation (β-glucosidase) between gene expression and imbibition capacity, and the other gene (β-galactosidase) presented a negative correlation between gene expression and SCT.

Indexed as

DomesticationLens PlantPlant DormancySeedsTranscriptomeChromosome MappingGene Expression ProfilingGene Expression Regulation, PlantGerminationPhenotypeQuantitative Trait Loci

Identifiers

PMID40164967
PMCPMC11958875

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.