Evidence map›Paper›PMID 40164829›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2025

Loss-of-functional mutation in ANGUSTIFOLIA3 causes leucine hypersensitivity and hypoxia response during Arabidopsis thaliana seedling growth.

Kensuke Kawade, Mamoru Nozaki, Gorou Horiguchi, Tomoko Mori, Katsushi Yamaguchi, Mami Okamoto, Hiromitsu Tabeta, Shuji Shigenobu, Masami Yokota Hirai, Hirokazu Tsukaya

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kensuke Kawade *Graduate School of Science and Engineering, Saitama University, Saitama City, Saitama, 338-8570, Japan. kawade@mail.saitama-u.ac.jp.ORCID http://orcid.org/0000-0003-1701-4567
Mamoru Nozaki *Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki, Aichi, 444-8787, Japan.
Gorou HoriguchiCollege of Science, Rikkyo University, Toshima-ku, Tokyo, 171-8501, Japan.
Tomoko MoriNational Institutes of Natural Sciences, National Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan.
Katsushi YamaguchiNational Institutes of Natural Sciences, National Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan.
Mami OkamotoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.
Hiromitsu TabetaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.
Shuji ShigenobuNational Institutes of Natural Sciences, National Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan.
Masami Yokota HiraiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.ORCID http://orcid.org/0000-0003-0802-6208
Hirokazu TsukayaExploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki, Aichi, 444-8787, Japan.ORCID http://orcid.org/0000-0002-4430-4538

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe ANGUSTIFOLIA3 (AN3) gene encodes a transcriptional co-activator for cell proliferation in Arabidopsis thaliana leaves. We previously showed that Physcomitrium patens AN3 orthologs promote gametophore shoot formation through arginine metabolism.

objectivesWe analyzed the role of AN3 in Arabidopsis thaliana to understand how seedling growth is regulated by metabolic and physiological modulations.

methodsWe first explored amino acids that affect the seedling growth of an3 mutants. Transcriptome and metabolome analyses were conducted to elucidate the metabolic and physiological roles of AN3 during seedling growth. Lastly, we examined the distribution of reactive oxygen species to corroborate our omics-based findings.

resultsOur results indicated that an3 mutants were unable to establish seedlings when grown with leucine, but not arginine. Multi-omics analyses suggested that an3 mutants exhibit a hypoxia-like response. Abnormal oxidative status was confirmed by detecting an altered distribution of reactive oxygen species in the roots of an3 mutants.

conclusionAN3 helps maintain the leucine metabolism and oxidative balance during seedling growth in Arabidopsis thaliana. Future research is necessary to explore the interaction between these processes.

Indexed as

ArabidopsisArabidopsis ProteinsLeucineSeedlingsGene Expression Regulation, PlantLoss of Function MutationMutationReactive Oxygen SpeciesArabidopsis ProteinsLeucineReactive Oxygen SpeciesANGUSTIFOLIA3Arabidopsis thalianaHypoxia responseLeucine metabolismReactive oxygen species

Identifiers

PMID40164829
PMCPMC11958482

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.