Evidence map›Paper›PMID 40164629›Full record

ArticleScientific data2025

Near telomere-to-telomere genome assembly of the blackspot tuskfish (Choerodon schoenleinii).

Zhongdian Dong, Jiahao Gao, Yanfei Zhao, Jin Gao, Yusong Guo, Zhongduo Wang, Ning Zhang

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhongdian DongKey Laboratory of Aquaculture in the South China Sea for Aquatic Economic Animals of Guangdong Higher Education Institutes, College of Fishery, Guangdong Ocean University, Zhanjiang, 524088, China.
Jiahao GaoKey Laboratory of Aquaculture in the South China Sea for Aquatic Economic Animals of Guangdong Higher Education Institutes, College of Fishery, Guangdong Ocean University, Zhanjiang, 524088, China.
Yanfei ZhaoAgro-Tech Extension Center of Guangdong Province, Guangzhou, 510000, China.
Jin GaoHainan Academy of Ocean and Fisheries Sciences, Haikou, 571126, China.
Yusong GuoKey Laboratory of Aquaculture in the South China Sea for Aquatic Economic Animals of Guangdong Higher Education Institutes, College of Fishery, Guangdong Ocean University, Zhanjiang, 524088, China.
Zhongduo WangKey Laboratory of Aquaculture in the South China Sea for Aquatic Economic Animals of Guangdong Higher Education Institutes, College of Fishery, Guangdong Ocean University, Zhanjiang, 524088, China.ORCID http://orcid.org/0000-0003-0835-4463
Ning ZhangKey Laboratory of Aquaculture in the South China Sea for Aquatic Economic Animals of Guangdong Higher Education Institutes, College of Fishery, Guangdong Ocean University, Zhanjiang, 524088, China. zhangn@gdou.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Choerodon schoenleinii, commonly known as the blackspot tuskfish, widely recognized for its vibrant coloration, unique small black spot on the dorsal fin, and high value in both ornamental and culinary markets. Here, we report a high-quality near telomere-to-telomere (T2T) genome assembly of C. schoenleinii, generated using PacBio HiFi and Hi-C technologies. The assembly spans 865.99 Mb, achieving chromosome-level resolution with 24 chromosomes anchored. Notably, telomeres were identified at both ends of 23 chromosomes, with 14 being completely gapless and only 12 gaps detected across the remaining nine. A total of 24,524 protein-coding genes were annotated, with 96.25% assigned functional annotations. The assembly quality was validated with a BUSCO score of 99.80%. The gene annotation was further evaluated using OMArk, with 23,590 proteins (96.19%) consistent with the Clade Teleostei, highlighting the high-quality and taxonomic relevance of the gene set. This reference genome provides a valuable resource for advancing research in the genetics, evolutionary biology, conservation, and breeding of C. schoenleinii, a species currently listed as "Near Threatened" by the IUCN.

Indexed as

FishesGenomeTelomereAnimalsMolecular Sequence Annotation

Identifiers

PMID40164629
PMCPMC11958792

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.