Evidence map›Paper›PMID 40164609›Full record

ArticleNature communications2025

Analysis of allohexaploid wheatgrass genome reveals its Y haplome origin in Triticeae and high-altitude adaptation.

Yi Xiong, Shuai Yuan, Yanli Xiong, Lizuiyue Li, Jinghan Peng, Jin Zhang, Xing Fan, Chengzhi Jiang, Li-Na Sha, Zhaoting Wang and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. PhytoKeys · 2026
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Yi Xiong *College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.ORCID http://orcid.org/0000-0003-3086-0282
Shuai Yuan *State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, China.
Yanli Xiong *College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Lizuiyue Li *National Plateau Wetlands Research Center, Southwest Forestry University, Kunming, 650224, China.
Jinghan Peng *College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.ORCID http://orcid.org/0000-0002-5680-2729
Jin ZhangState Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, China.
Xing FanTriticeae Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.ORCID http://orcid.org/0000-0003-4199-5369
Chengzhi JiangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan, 610054, China.
Li-Na ShaCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Zhaoting WangCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Xue PengCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Zecheng ZhangCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Qingqing YuSichuan Academy of Grassland Sciences, Chengdu, Sichuan, 611700, China.
Xiong LeiSichuan Academy of Grassland Sciences, Chengdu, Sichuan, 611700, China.
Zhixiao DongCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Yingjie LiuCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Junming ZhaoCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
Guangrong LiSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan, 610054, China.
Zujun YangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan, 610054, China.
Shangang JiaCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.ORCID http://orcid.org/0000-0002-3306-7637
Daxu LiSichuan Academy of Grassland Sciences, Chengdu, Sichuan, 611700, China.
Ming SunSchool of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan, 621010, China.
Shiqie BaiSchool of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan, 621010, China. baishiqie@swust.edu.cn.ORCID http://orcid.org/0009-0001-9391-595X
Jianquan LiuState Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, China. Liujq@nwipb.ac.cn.ORCID http://orcid.org/0000-0002-4237-7418
Yongzhi YangState Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, China. yangyz@lzu.edu.cn.ORCID http://orcid.org/0000-0001-6912-6718
Xiao MaCollege of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China. maroar@126.com.ORCID http://orcid.org/0000-0002-4491-3528

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32271753
6 · The paper itself

Abstract

Phylogenetic origin of the Y haplome present in allopolyploid Triticeae species remains unknown. Here, we report the 10.47 Gb chromosome-scale genome of allohexaploid Elymus nutans (StStYYHH). Phylogenomic analyses reveal that the Y haplome is sister to the clade comprising V and Jv haplomes from Dasypyrum and Thinopyum. In addition, H haplome from the Hordeum-like ancestor, St haplome from the Pseudoroegneria-like ancestor and Y haplome are placed in the successively diverged clades. Resequencing data reveal the allopolyploid origins with St, Y, and H haplome combinations in Elymus. Population genomic analyses indicate that E. nutans has expanded from medium to high/low-altitude regions. Phenotype/environmental association analyses identify MAPKKK18 promoter mutations reducing its expression, aiding UV-B adaptation in high-altitude populations. These findings enhance understanding of allopolyploid evolution and aid in breeding forage and cereal crops through intergeneric hybridization within Triticeae.

Indexed as

Adaptation, PhysiologicalAltitudeElymusGenome, PlantPoaceaePolyploidyChromosomes, PlantEvolution, MolecularHaplotypesHordeumPhylogeny

Identifiers

PMID40164609
PMCPMC11958778

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.