Evidence map›Paper›PMID 40164607›Full record

ArticleScientific data2025

Chromosome-level genome assembly of Jiaobai (Zizania latifolia, Poceace).

Yan Huang, Yipeng Li, Lingyun Wang, Shangfa Zhang, Linyan Li, Ruiqi Song, Wei Sheng, Zhaisheng Zheng, Xinyi Zhang, Mengfei Yang and 1 more

Erratum issuedAbstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Yan Huang *Zhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Yipeng Li *Zhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Lingyun WangZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Shangfa ZhangZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Linyan LiWuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Ruiqi SongZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Wei ShengZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Zhaisheng ZhengZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Xinyi ZhangWuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China. zhangxinyi@wbgcas.cn.
Mengfei YangZhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China. banmatus@foxmail.com.
Yingxiong QiuWuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cultivated Zizania latifolia, commonly known as Jiaobai, was domesticated as a special form of a plant-fungus symbiont. It is one of the most popular aquatic vegetables endemic to East Asia. However, the absence of a reference genome has hindered research on this important vegetable. In this study, we sequenced and assembled a chromosome-level genome of Jiaobai, the size of which is 596.34 Mb with a contig N50 of 32.74 Mb by integrating PacBio, Illumina and chromosome conformation capture data. A total of 571.70 Mb (95.87%) of the assembled sequences were anchored onto 17 chromosomes and 36,286 gene models were predicted. This study provides valuable genomic resources for uncovering the mechanisms underlying plant-pathogenic fungus interactions and developing genomics-assisted breeding programs in Jiaobai.

Indexed as

Chromosomes, PlantGenome, PlantPoaceae

Identifiers

PMID40164607
PMCPMC11958735

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.