Evidence map›Paper›PMID 40162990›Full record

ArticleeLife2025

Architecture of genome-wide transcriptional regulatory network reveals dynamic functions and evolutionary trajectories in

Yue Sun, Jingwei Li, Jiadai Huang, Shumin Li, Youyue Li, Beifang Lu, Xin Deng

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yue Sun *Department of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0009-0008-2843-0017
Jingwei Li *Department of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.
Jiadai Huang *Department of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0002-4104-6836
Shumin LiThe University of Hong Kong, Pokfulam, Hong Kong, China.
Youyue LiDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0003-4976-3407
Beifang LuDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.
Xin DengDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0003-1580-0089

Funding

General Research Funds of Hong Kong 11101722General Research Funds of Hong Kong 11102223General Research Funds of Hong Kong 11102720Guangdong Major Project of Basic and Applied Basic Research 2020B0301030005National Natural Science Foundation of China 32172358Shenzhen Science and Technology Fund JCYJ20210324134000002Theme-based Research Scheme T11-104/22-R
6 · The paper itself

Abstract

The model Gram-negative plant pathogen

Indexed as

Evolution, MolecularGene Expression Regulation, BacterialGene Regulatory NetworksGenome, BacterialPseudomonas syringaeTranscription FactorsBacterial ProteinsChromatin Immunoprecipitation SequencingVirulenceBacterial ProteinsTranscription Factorsinfectious diseasemicrobiologyPseudomonas syringaeregulatory networktranscription factor

Identifiers

PMID40162990
PMCPMC11957545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.