Evidence map›Paper›PMID 40162839›Full record

ReviewJournal of bacteriology2025

Controlled burn: interconnections between energy-spilling pathways and metabolic signaling in bacteria.

Nicolaus Jakowec, Steven E Finkel

Abstract readReview
In one paragraph

Review in Journal of bacteriology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Aerotolerant capacity of the lung symbiontJournal of bacteriology · 2026
    Article
  5. Article
  6. Characterizing the Impact of Nucleoid-Associated Proteins on HU-DNA Interactions by Live-Cell Single-Molecule Tracking.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Nicolaus JakowecMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.ORCID 0009-0005-8950-0275
Steven E FinkelMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.ORCID 0000-0003-1715-6696

Funding

Air Force Office of Scientific Research FA9550-19-1-0249,FA9550-23-1-0287National Science Foundation OCE9039564
6 · The paper itself

Abstract

Bacterial energy-spilling pathways-such as overflow metabolism and futile cycles-have been considered inefficient forms of metabolism that result from poor regulatory control or function as mechanisms to cope with excess energy. However, mounting evidence places these seemingly wasteful reactions at the fulcrum between metabolic signaling and stress adaptation in bacteria. Specifically, energy-spilling pathways may mediate the metabolic reprogramming observed when cells encounter growth-limiting constraints (i.e., nutrient limitation). Recent insights spotlight microbial metabolism as an intricate signaling network that coordinates physiological programming with energy and nutrient conditions. Such intracellular metabolic cross stalk is pivotal to survival in competitive, fluctuating environments that bacteria frequently encounter in nature. In light of this paradigm of metabolic signaling, energy-spilling pathways are increasingly recognized as regulatory strategies that enable metabolic rewiring in response to stress. Overflow metabolism or futile cycles may generate secondary metabolites with signaling properties, alter the flux of metabolic pathways and the rate of nutrient acquisition, or stimulate regulatory nodes to trigger specific metabolic programs in response to environmental challenges. Furthermore, the observation of such expensive pathways under laboratory conditions purported to be "energy limiting" may in fact suggest energy sufficiency, compelling us to rethink how we model energy limitation and starvation for bacteria.

Indexed as

BacteriaEnergy MetabolismMetabolic Networks and PathwaysSignal TransductionGene Expression Regulation, BacterialStress, Physiologicalenergy metabolismfutile cyclesintracellular signalingmetabolic signalingoverflow metabolismstarvationstationary phase

Identifiers

PMID40162839
PMCPMC12096831

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.