Evidence map›Paper›PMID 40161766›Full record

ArticlebioRxiv : the preprint server for biology2025

Correlative light and electron microscopy reveals the fine circuit structure underlying evidence accumulation in larval zebrafish.

Jonathan Boulanger-Weill, Florian Kämpf, Gregor F P Schuhknecht, Richard L Schalek, Mariela Petakova, Sumit Kumar Vohra, Yuelong Wu, Jay H Savaliya, Robert Tiller, Kristian J Herrera and 17 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Jonathan Boulanger-WeillDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-1580-0778
Florian KämpfDepartment of Biology, University of Konstanz, Konstanz, Germany.ORCID 0009-0001-7036-4729
Gregor F P SchuhknechtDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5797-2386
Richard L SchalekDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Mariela PetakovaDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-9815-7871
Sumit Kumar VohraDepartment of Visual and Data-Centric Computing, Zuse Institute Berlin (ZIB), Berlin, Germany.ORCID 0000-0003-2443-7461
Yuelong WuDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Jay H SavaliyaDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0005-9223-8757
Robert TillerDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Kristian J HerreraDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-5370-8366
Heike NaumannDepartment of Biology, University of Konstanz, Konstanz, Germany.ORCID 0000-0003-3883-0432
Maren EberleDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Simone RenckenDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0003-9341-2898
Moritz StinglDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5483-026X
Alina HeblingDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Dana HocklingDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Katja SlangewalCentre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.ORCID 0000-0003-0074-2656
Zixuan DengDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-6524-6771
Ruohong C WangDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Lauren L ZhangDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.
Kim N KirchbergerDepartment of Biology, University of Konstanz, Konstanz, Germany.ORCID 0009-0003-1966-7307
Isaac H BiancoDepartment of Neuroscience, Physiology & Pharmacology, University College London, London, United Kingdom.ORCID 0000-0002-3149-4862
Daniel BaumDepartment of Visual and Data-Centric Computing, Zuse Institute Berlin (ZIB), Berlin, Germany.ORCID 0000-0003-1550-7245
Filippo Del BeneSorbonne Université, CNRS, Inserm, Institut de la Vision, F-75012 Paris, France.ORCID 0000-0001-8551-2846
Florian EngertDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-8169-2990
Jeff W LichtmanDepartment of Molecular and Cellular Biology, Faculty of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-0208-3212
Armin BahlCentre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.ORCID 0000-0001-7591-5860

Funding

Zooming into the fish's brain-What is really going on! Connectomics analysis of larval zebrafish.U19NS104653 · NINDS · HARVARD UNIVERSITY · PI Jeff W Lichtman · 2017 to 2026
$39.4M
Genetic and neural mechanisms underlying emerging social behavior in zebrafishR01NS124017 · NINDS · HARVARD UNIVERSITY · PI ENGERT, FLORIAN, FISHMAN, MARK C · 2024 to 2025
$1.5M
NINDS NIH HHS R01 NS124017NINDS NIH HHS U19 NS104653
6 · The paper itself

Abstract

Evidence accumulation is a fundamental neural computation essential for adaptive behavior, yet its synaptic implementation remains unclear. Addressing this challenge critically depends on linking neural dynamics to circuit structure within the same brain. Here, we combine functional calcium imaging with large-scale ultrastructural electron microscopy (EM) to uncover the wiring logic of visual evidence accumulation in larval zebrafish. In a functionally imaged EM dataset of the anterior hindbrain, we identify conserved morphological cell types whose activity patterns define distinct computational roles. Bilateral inhibition, disinhibition, and recurrent connectivity emerge as key circuit motifs shaping these dynamics. To generalize our findings across animals, we develop a photoconversion-based pipeline to label and reconstruct functionally characterized neurons, enabling us to train a classifier that predicts functional identity from morphology alone. Applying this classifier to a second, whole-brain EM dataset lacking functional data reveals matching connectivity patterns, significantly augmenting its applicability for detailed circuit dissections. Based on these results, we develop and constrain a biophysically realistic neural network model that captures observed dynamics and yields predictions we tested and confirmed experimentally. Our work illustrates how hypothesis-driven connectomics can uncover the synaptic basis of sensory-motor computations and establishes a novel framework for cross-animal circuit dissection in the vertebrate brain.

Identifiers

PMID40161766
PMCPMC11952533

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.