Evidence map›Paper›PMID 40161739›Full record

ArticlebioRxiv : the preprint server for biology2025

Silencing

Amelia Meecham, Sara McCurdy, Eduardo Frias-Anaya, Wenqing Li, Helios Gallego-Gutierrez, Phu Ngyuen, Julie Yi-Shuan Li, Shu Chien, John Y-J Shyy, Mark H Ginsberg and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Amelia MeechamDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Sara McCurdyDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Eduardo Frias-AnayaDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Wenqing LiDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Helios Gallego-GutierrezDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Phu NgyuenDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Julie Yi-Shuan LiDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Shu ChienDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
John Y-J ShyyDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.
Mark H GinsbergDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-5685-5417
Miguel A Lopez-RamirezDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-7089-4060

Funding

The Hemostasis, Thrombosis, and Inflammation Models CoreP01HL151433 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Mark HOWARD Ginsberg · 2020 to 2026
$16.4M
Mechanisms of hypoxia induced exacerbation of cerebral cavernous malformationsR01NS121070 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Miguel Alejandro Lopez-Ramirez · 2022 to 2026
$2.3M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NHLBI NIH HHS P01 HL151433NIH HHS S10 OD026929NINDS NIH HHS R01 NS121070
6 · The paper itself

Abstract

Background: Endothelial cells respond to forces generated by laminar blood flow with changes in vasodilation, anticoagulant, fibrinolytic, or anti-inflammatory functions which preserve vessel patency. These responses to flow sheer stress are primarily mediated by the modulation of transcription factors Krüppel-like factors 2 and 4 (KLF2 and KLF4). Notably, disturbed flow patterns, which are found in vascular areas predisposed to atherosclerosis, significantly reduce the endothelial expression of KLF2 and KLF4, resulting in changes in the transcriptome that exacerbate inflammation and thrombosis. The endothelial CCM complex, comprising KRIT1, CCM2, and CCM3, suppresses the expression of KLF2 and KLF4. Loss of function of the CCM complex has recently been suggested to protect from coronary atherosclerosis in humans. We thus hypothesized that silencing of Methods: Bulk RNA sequencing (RNA-seq) was conducted on human umbilical vein endothelial cells (HUVECs) after the expression of KRIT1 was silenced using specific siRNAs. The endothelial cells were exposed to three different conditions for 24 hours: pulsatile shear stress (laminar flow), oscillatory shear stress (disturbed flow), and static conditions (no flow). Results: We found that silencing Conclusions: Targeting CCM genes can activate well-known vasoprotective gene programs that enhance endothelial resilience to inflammation, hypoxia, and angiogenesis under disturbed flow conditions, providing a novel pathway for preventing atherosclerosis.

Indexed as

atherosclerosisendothelial cellsEndotheliumoscillatory shear stresspulsatile shear stressvasoprotection

Identifiers

PMID40161739
PMCPMC11952409

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.