Evidence map›Paper›PMID 40161713›Full record

ArticlebioRxiv : the preprint server for biology2025

HIPPIE: A Multimodal Deep Learning Model for Electrophysiological Classification of Neurons.

Jesus Gonzalez-Ferrer, Julian Lehrer, Hunter E Schweiger, Jinghui Geng, Sebastian Hernandez, Francisco Reyes, Jess L Sevetson, Sofie R Salama, Mircea Teodorescu, David Haussler and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Jesus Gonzalez-FerrerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0002-5588-921X
Julian LehrerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0003-3434-1025
Hunter E SchweigerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0003-0399-9481
Jinghui GengGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0002-3431-9568
Sebastian HernandezGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0009-0000-8811-8596
Francisco ReyesGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.
Jess L SevetsonGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0001-7434-1447
Sofie R SalamaGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0001-6999-7193
Mircea TeodorescuGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0001-7085-5248
David HausslerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0003-1533-4575
Mohammed A Mostajo-RadjiGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, 95060, USA.ORCID 0000-0002-1634-7514

Funding

Nanoparticle Tracking Analyzer (NTA) for the Center for Live Cell GenomicsRM1HG011543 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, SALAMA, SOFIE REDA · 2021 to 2025
$12.0M
Data Resource and Administrative Coordination Center for the Scalable and Systematic Neurobiology of Psychiatric and Neurodevelopmental Disorder Risk Genes ConsortiumU24MH132628 · NIMH · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI DAVID H HAUSSLER, Tomasz Nowakowski · 2023 to 2026
$7.9M
NHGRI NIH HHS RM1 HG011543NIMH NIH HHS U24 MH132628
6 · The paper itself

Abstract

Extracellular electrophysiological recordings present unique computational challenges for neuronal classification due to noise, technical variability, and batch effects across experimental systems. We introduce HIPPIE (High-dimensional Interpretation of Physiological Patterns In Extracellular recordings), a deep learning framework that combines self-supervised pretraining on unlabeled datasets with supervised fine-tuning to classify neurons from extracellular recordings. Using conditional convolutional joint autoencoders, HIPPIE learns robust, technology-adjusted representations of waveforms and spiking dynamics. This model can be applied to electrophysiological classification and clustering across diverse biological cultures and technologies. We validated HIPPIE on both

Indexed as

ElectrophysiologyMultielectrode arraysNeurodevelopmentNeuronal classificationNeuroscience data

Identifiers

PMID40161713
PMCPMC11952528

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.