Evidence map›Paper›PMID 40155743›Full record

ArticleNature structural & molecular biology2025

OGT prevents DNA demethylation and suppresses the expression of transposable elements in heterochromatin by restraining TET activity genome-wide.

Hugo Sepulveda, Xiang Li, Leo J Arteaga-Vazquez, Isaac F López-Moyado, Melina Brunelli, Lot Hernández-Espinosa, Xiaojing Yue, J Carlos Angel, Caitlin Brown, Zhen Dong and 11 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Maternal O-GlcNAc Transferase Is Required for the Asymmetry of Epigenetic Modifications in Mouse Zygotes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Perturbing nuclear glycosylation in the mouse preimplantation embryo slows down embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Hugo Sepulveda *Division of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-7487-6481
Xiang Li *Division of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Leo J Arteaga-VazquezDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Isaac F López-MoyadoDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Melina BrunelliDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Lot Hernández-EspinosaDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Xiaojing YueDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
J Carlos AngelDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Caitlin BrownDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Zhen DongDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Natasha JanszMater Research Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-3319-8493
Fabio Puddubiomodal, Chesterford Research Park, Cambridge, UK.ORCID http://orcid.org/0000-0002-2033-5209
Aurélie Modatbiomodal, Chesterford Research Park, Cambridge, UK.
Jamie Scotcherbiomodal, Chesterford Research Park, Cambridge, UK.ORCID http://orcid.org/0000-0003-4778-4968
Páidí Creedbiomodal, Chesterford Research Park, Cambridge, UK.
Patrick H KennedyDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Cindy Manriquez-RodriguezDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.
Samuel A MyersDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-7636-0887
Robert Crawfordbiomodal, Chesterford Research Park, Cambridge, UK. robert.crawford@biomodal.com.ORCID http://orcid.org/0009-0003-2487-4626
Geoffrey J FaulknerMater Research Institute, University of Queensland, Brisbane, Queensland, Australia. geoffrey.faulkner@mater.uq.edu.au.ORCID http://orcid.org/0000-0001-5769-4494
Anjana RaoDivision of Signaling and Gene Expression, La Jolla Institute for Immunology, La Jolla, CA, USA. arao@lji.org.ORCID http://orcid.org/0000-0002-1870-1775

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
The TET-DNMT-ASXL1-OGT axis: relevance to clonal hematopoiesis, heterochromatin integrity and cancerR35CA210043 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Anjana Rao · 2016 to 2026
$10.6M
Elucidating the signaling and protein interaction networks of the O-GlcNAc transferase during embryonic stem cell state transitionsR35GM147554 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Samuel Anthony Myers · 2022 to 2026
$2.4M
NovaSeq5000 High Throughput SequencerS10OD025052 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SEUMOIS, GREGORY · 2018 to 2018
$832k
CyTOF Mass CytometerS10OD018499 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROTTY, SHANE P · 2014 to 2014
$802k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NCI NIH HHS R35 CA210043NCRR NIH HHS S10 RR027366NIGMS NIH HHS R35 GM147554NIGMS NIH HHS T32 GM007752NIH HHS S10 OD018499NIH HHS S10 OD025052
6 · The paper itself

Abstract

O-GlcNAc transferase (OGT) interacts robustly with all three mammalian TET methylcytosine dioxygenases. Here we show that deletion of the Ogt gene in mouse embryonic stem (mES) cells results in a widespread increase in the TET product 5-hydroxymethylcytosine in both euchromatic and heterochromatic compartments, with a concomitant reduction in the TET substrate 5-methylcytosine at the same genomic regions. mES cells treated with an OGT inhibitor also displayed increased 5-hydroxymethylcytosine, and attenuating the TET1-OGT interaction in mES cells resulted in a genome-wide decrease of 5-methylcytosine, indicating that OGT restrains TET activity and limits inappropriate DNA demethylation in a manner that requires the TET-OGT interaction and the catalytic activity of OGT. DNA hypomethylation in OGT-deficient cells was accompanied by derepression of transposable elements predominantly located in heterochromatin. We suggest that OGT protects the genome against TET-mediated DNA demethylation and loss of heterochromatin integrity, preventing the aberrant increase in transposable element expression noted in cancer, autoimmune-inflammatory diseases, cellular senescence and aging.

Indexed as

DNA-Binding ProteinsDNA DemethylationDNA MethylationDNA Transposable ElementsHeterochromatinN-AcetylglucosaminyltransferasesProto-Oncogene Proteins5-MethylcytosineAnimalsDioxygenasesGenomeMiceMouse Embryonic Stem Cells5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNA-Binding ProteinsDNA Transposable ElementsHeterochromatinN-AcetylglucosaminyltransferasesO-GlcNAc transferaseProto-Oncogene ProteinsTET1 protein, mouse

Identifiers

PMID40155743
PMCPMC12263339

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.