Evidence map›Paper›PMID 40155720›Full record

ReviewNature methods2025

Enabling global image data sharing in the life sciences.

Peter Bajcsy, Sreenivas Bhattiprolu, Katy Börner, Beth A Cimini, Lucy Collinson, Jan Ellenberg, Reto Fiolka, Maryellen Giger, Wojtek Goscinski, Matthew Hartley and 14 more

Abstract readReview
In one paragraph

Review in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. The HuBMAP Framework for Advancing Data FAIRness.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Reporting light microscopy data in our pages.Nature structural & molecular biology · 2025
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Peter BajcsyNational Institute of Standards and Technology, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0002-6968-2615
Sreenivas BhattiproluZEISS Microscopy Customer Center, Dublin, OH, USA.
Katy BörnerIntelligent Systems Engineering, Indiana University, Bloomington, IN, USA.ORCID http://orcid.org/0000-0002-3321-6137
Beth A CiminiImaging Platform, Broad Institute, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-9640-9318
Lucy CollinsonElectron Microscopy Science Technology Platform, Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-0260-613X
Jan EllenbergEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5909-701X
Reto FiolkaLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-4636-5000
Maryellen GigerDepartment of Radiology and Committee on Medical Physics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-5482-9728
Wojtek GoscinskiNational Imaging Facility, Brisbane, Queensland, Australia.
Matthew HartleyEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-6178-2884
Nathan HotalingNational Center for Advancing Translational Science, National Institutes of Health, Rockville, MD, USA.ORCID http://orcid.org/0000-0001-8423-6464
Rick HorwitzAllen Institute for Cell Science, Seattle, WA, USA.
Florian JugFondazione Human Technopole, Milan, Italy.
Isabel KemmerEuro-BioImaging Bio-Hub, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8799-4671
Anna KreshukEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-1334-6388
Emma LundbergStanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-7034-0850
Aastha MathurEuro-BioImaging Bio-Hub, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-9734-9767
Kedar NarayanCenter for Molecular Microscopy, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Shuichi OnamiRIKEN Center for Biosystems Dynamics Research, Kobe, Japan.ORCID http://orcid.org/0000-0002-8255-1724
Anne L PlantNational Institute of Standards and Technology, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0002-8538-401X
Fred PriorDepartment of Biomedical Informatics, Department of Radiology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.ORCID http://orcid.org/0000-0002-6314-5683
Jason R SwedlowDivisions of Computational Biology and Molecular, Cell and Developmental Biology, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-2198-1958
Adam TaylorSage Bionetworks, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-0501-8886
Antje KepplerEuro-BioImaging Bio-Hub, European Molecular Biology Laboratory, Heidelberg, Germany. antje.keppler@eurobioimaging.eu.ORCID http://orcid.org/0000-0003-4358-2269

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Technical Development Unit 2: Intelligent Hyperspectral Imaging of Subcellular Molecular States at the Whole Organ LevelU54CA268072 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI JAMES F AMATRUDA, Kevin Michael Dean · 2021 to 2026
$9.1M
Transformative microscopes to image across spatiotemporal scalesR35GM133522 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Reto Paul Fiolka · 2019 to 2026
$3.1M
Multiscale microscope for 3D cancer imaging in model organisms and organoidsR33CA235254 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI FIOLKA, RETO PAUL · 2019 to 2021
$930k
NCI NIH HHS 75N91019D00024NCI NIH HHS R33 CA235254NCI NIH HHS U54 CA268072NIGMS NIH HHS R35 GM133522
6 · The paper itself

Abstract

Despite the importance of imaging in biological and medical research, a large body of informative and precious image data never sees the light of day. To ensure scientific rigor as well as the reuse of data for scientific discovery, image data need to be made FAIR (findable, accessible, interoperable and reusable). Image data experts are working together globally to agree on common data formats, metadata, ontologies and supporting tools toward image data FAIRification. With this Perspective, we call on public funders to join these efforts to support their national scientists. What researchers most urgently need are openly accessible resources for image data storage that are operated under long-term commitments by their funders. Although existing resources in Australia, Japan and Europe are already collaborating to enable global image data sharing, these efforts will fall short unless more countries invest in operating and federating their own open data resources. This will allow us to harvest the enormous potential of existing image data, preventing substantial loss of unrealized value from past investments in imaging acquisition infrastructure.

Indexed as

Biological Science DisciplinesInformation DisseminationHumansInformation Storage and RetrievalMetadata

Identifiers

PMID40155720
PMCPMC12617600

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.