Evidence map›Paper›PMID 40155554›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2025

Penalized factorial regression as a flexible and computationally attractive reaction norm model for prediction in the presence of GxE.

Vahe Avagyan, Martin P Boer, Junita Solin, Aalt D J van Dijk, Daniela Bustos-Korts, Bart-Jan van Rossum, Jip J C Ramakers, Fred van Eeuwijk, Willem Kruijer

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vahe AvagyanBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Martin P BoerBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Junita SolinBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Aalt D J van DijkBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Daniela Bustos-KortsBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Bart-Jan van RossumBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Jip J C RamakersBiometris, Wageningen University and Research, Wageningen, The Netherlands.
Fred van EeuwijkBiometris, Wageningen University and Research, Wageningen, The Netherlands. fred.vaneeuwijk@wur.nl.ORCID http://orcid.org/0000-0003-3672-2921
Willem KruijerBiometris, Wageningen University and Research, Wageningen, The Netherlands.

Funding

GRDC OQ2003-11RTXHorizon 2020 Framework Programme 81797
6 · The paper itself

Abstract

key messagePenalized factorial regression offers a computationally attractive alternative to kernel and deep learning methods for prediction of genotype by environment interactions. For two representative data sets on wheat and maize, prediction accuracies were comparable, while computing requirements and time were clearly lower. A longstanding challenge in plant breeding and genetics is the prediction of yield for new environments in the presence of genotype by environment interaction (

Indexed as

Gene-Environment InteractionModels, GeneticTriticumZea maysGenotypeRegression Analysis

Identifiers

PMID40155554
PMCPMC11953130

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.