Evidence map›Paper›PMID 40155466›Full record

ArticleNPJ precision oncology2025

A complex phylogeny of lineage plasticity in metastatic castration resistant prostate cancer.

Jones T Nauseef, Timothy R Chu, William F Hooper, Alicia Alonso, Ali Oku, Heather Geiger, Zoe R Goldstein, Minita Shah, Michael Sigouros, Jyothi Manohar and 12 more

Abstract read
In one paragraph

Article in NPJ precision oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Jones T Nauseef *Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA. jtn2001@med.cornell.edu.ORCID http://orcid.org/0000-0003-2302-4171
Timothy R Chu *New York Genome Center, New York, NY, USA.
William F Hooper *New York Genome Center, New York, NY, USA.
Alicia AlonsoEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Ali OkuNew York Genome Center, New York, NY, USA.
Heather GeigerNew York Genome Center, New York, NY, USA.
Zoe R GoldsteinNew York Genome Center, New York, NY, USA.
Minita ShahNew York Genome Center, New York, NY, USA.
Michael SigourosEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-0328-8359
Jyothi ManoharEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Zoe SteinsnyderNew York Genome Center, New York, NY, USA.
Lara WinterkornNew York Genome Center, New York, NY, USA.
Brian D RobinsonEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-5374-890X
Andrea SbonerEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-6915-3070
Himisha BeltranEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-3259-2226
Olivier ElementoEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-8061-9617
Iman HajirasoulihaEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-0600-3371
Marcin ImielinskiEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
David M NanusDivision of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Scott T TagawaDivision of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-2777-8587
Nicolas RobineNew York Genome Center, New York, NY, USA. nrobine@nygenome.org.ORCID http://orcid.org/0000-0001-5698-8183
Juan Miguel MosqueraEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA. jmm9018@med.cornell.edu.ORCID http://orcid.org/0000-0003-4666-6476

Funding

Weill Cornell Medicine (WCM) SPORE in Prostate CancerP50CA211024 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LODA, MASSIMO · 2017 to 2021
$10.9M
Molecular mechanisms underlying lineage plasticity in prostate cancerR37CA241486 · NCI · DANA-FARBER CANCER INST · PI Himisha Beltran · 2020 to 2026
$4.1M
NCI NIH HHS P50 CA211024NCI NIH HHS R37 CA241486
6 · The paper itself

Abstract

Aggressive variant and androgen receptor (AR)-independent castration resistant prostate cancers (CRPC) represent the most significant diagnostic and therapeutic challenges in prostate cancer. This study examined a case of simultaneous progression of both adenocarcinoma and squamous tumors from the same common origin. Using whole-genome and transcriptome sequencing from 17 samples collected over >6 years, we established the clonal relationship of all samples, defined shared complex structural variants, and demonstrated both divergent and convergent evolution at AR. Squamous CRPC-associated circulating tumor DNA was identified at clinical progression prior to biopsy detection of any squamous differentiation. Dynamic changes in the detection rate of histology-specific clones in circulation reflected histology-specific sensitivity to treatment. This dataset serves as an illustration of non-neuroendocrine transdifferentiation and highlights the importance of serial sampling at progression in CRPC for the detection of emergent non-adenocarcinoma histologies with implications for the treatment of lineage plasticity and transdifferentiation in metastatic CRPC.

Identifiers

PMID40155466
PMCPMC11953479

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.