Evidence map›Paper›PMID 40148969›Full record

ArticleVirology journal2025

Isolation, characterization, and genomic analysis of three novel Herelleviridae family lytic bacteriophages against uropathogenic isolates of Staphylococcus saprophyticus.

Hesamaddin Shirzad-Aski, Mahsa Yazdi, Alireza Mohebbi, Maryam Rafiee, Abbas Soleimani-Delfan, Alijan Tabarraei, Ezzat Allah Ghaemi

Abstract read
In one paragraph

Article in Virology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Isolation and characterization of lytic bacteriophages against Staphylococcus aureus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hesamaddin Shirzad-Aski *Infectious Diseases Research Center, Golestan University of Medical Sciences, Gorgan, Iran.
Mahsa Yazdi *Laboratory Sciences Research Center, Golestan University of Medical Sciences, Gorgan, 49341-74515, Iran.
Alireza MohebbiDepartment of Virology, School of Medicine, Iran University of Medical Sciences, Tehran, Iran.
Maryam RafieeDepartment of Microbiology, School of Medicine, Golestan University of Medical Sciences, Gorgan, Iran.
Abbas Soleimani-DelfanDepartment of Cell and Molecular Biology & Microbiology, Faculty of Biological Science and Technology, University of Isfahan, HezarJereeb Street, Isfahan, 81746-73441, Iran.
Alijan TabarraeiInfectious Diseases Research Center, Golestan University of Medical Sciences, Gorgan, Iran.
Ezzat Allah GhaemiLaboratory Sciences Research Center, Golestan University of Medical Sciences, Gorgan, 49341-74515, Iran. eghaemi@yahoo.com.ORCID 0000-0001-7727-7452

Funding

Golestan University of Medical Sciences IR.GOUMS.Pajooheshyar-110508
6 · The paper itself

Abstract

backgroundStaphylococcus saprophyticus (S. saprophyticus) is the second most prevalent etiological agent of urinary tract infections (UTIs) in young women. However, there is a paucity of data regarding its bacteriophage (phage). Therefore, this study was conducted to isolate and identify new lytic phages from municipal wastewater with the objective of increasing knowledge about phages and their genomes.

methodsA total of 11 clinical isolates of S. saprophyticus and 30 wastewater samples were used to isolate three lytic phages (vB_SsapH-Golestan-100, vB_SsapH-Golestan101-M, and vB_SsapH-Golestan-105-M). The morphology, behavioral characteristics, and complete DNA genomes of these phages were analyzed.

resultsThe microscopic images of the phages revealed that the sizes of their heads and tail lengths fell within the ranges of 90-111 nm and 234-266 nm, respectively. All phages exhibited high adsorption rates (99.5% in 15 min) and burst sizes (150-210 PFU per infected cell), with a potential for a narrow host range. Genomic analysis of Staphylococcus phages indicated a size of 136,433 base pairs (bp) with a guanine-cytosine (GC) content of 33.7% and 192 open reading frames (ORFs) for vB_SsapH-Golestan-100, 144,081 bp with a GC content of 29.6% and 205 ORFs for vB_SsapH-Golestan101-M, and 142,199 bp with a GC content of 30.6% and 203 ORFs for vB_SsapH-Golestan-105-M. A bioinformatics analysis indicated that all three phages belong to the Twortvirinae subfamily of Herelleviridae. Among the three phages, vB_SsapH-Golestan-100 exhibited the least similarity to previously known phages, with less than 21% similarity with its closest counterparts in genomic databases.

conclusionsThis study identified new phages that have the ability to destroy a broad range of S. saprophyticus isolates and may potentially be classified as a new genus and species within the Herelleviridae family in future studies.

Indexed as

CaudoviralesGenome, ViralStaphylococcus PhagesStaphylococcus saprophyticusDNA, ViralGenomicsHost SpecificityHumansPhylogenySequence Analysis, DNAStaphylococcal InfectionsUrinary Tract InfectionsWastewaterDNA, ViralWastewaterHerelleviridaeLytic bacteriophageStaphylococcus saprophyticusUrinary tract infectionWhole genome sequencing

Identifiers

PMID40148969
PMCPMC11951804

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.