Evidence map›Paper›PMID 40148814›Full record

ArticleBMC plant biology2025

Amino acid metabolism pathways as key regulators of nitrogen distribution in tobacco: insights from transcriptome and WGCNA analyses.

Shichen Li, Waqar Ahmed, Tao Jiang, Dehai Yang, Linyuan Yang, Xiaodong Hu, Meiwei Zhao, Xiaoci Peng, Yingfen Yang, Wei Zhang and 2 more

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Integration of Non-Invasive Micro-Test Technology andInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The molecular mechanism of leaf margin fission inFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shichen Li *Yunnan Agricultural University, Kunming, Yunnan, 650000, China.
Waqar Ahmed *Yunnan Agricultural University, Kunming, Yunnan, 650000, China.
Tao Jiang *Yunnan Agricultural University, Kunming, Yunnan, 650000, China.
Dehai YangProduction Department, Yunnan Hongta Group Dali Cigarette Factory, Dali, Yunnan, 671000, China.
Linyuan YangYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Xiaodong HuYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Meiwei ZhaoYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Xiaoci PengYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Yingfen YangYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Wei ZhangYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Mingmin LiYunnan Agricultural University, Kunming, Yunnan, 650000, China.
Zhengxiong ZhaoYunnan Agricultural University, Kunming, Yunnan, 650000, China. zhaozx0801@163.com.

Funding

National Key Research Plan of China 2022YFD1901504
6 · The paper itself

Abstract

BACKGROUND AND

aimNitrogen (N) is crucial for plant growth and is distributed across various N morphologies within plant organs. However, the mechanisms controlling the distribution of these N morphologies are not fully understood. This study investigated key amino acid (AA) biosynthesis pathways regulating N distribution and their impact on plant physiology and growth.

methodsWe examined N distribution in the leaves, stems, and roots of two tobacco cultivars (Hongda and K326) under different N treatments at 75, and 100 days after transplanting (DAT). Transcriptome analysis was performed at 75 and 100 DAT to explore N distribution and AA metabolism pathways. Weighted gene co-expression network analysis (WGCNA) identified pathways regulating N distribution, and the Mantel test assessed the impact of N treatments, growth stages, and cultivars on N distribution.

resultsStatistically significant differences in N distribution were observed across environmental conditions, growth stages, cultivars, and plant organs (p < 0.05). WGCNA identified phenylalanine metabolism (ko00360), alanine, aspartate, and glutamate metabolism (ko00250), and glycine, serine, and threonine metabolism (ko00260) pathways regulating the distribution of N

conclusionThis study elucidates the mechanisms regulating N distribution in tobacco, emphasizing the role of AA metabolism pathways. These findings are essential for improving N utilization and optimizing N management practices, ultimately enhancing crop productivity and supporting sustainable agricultural practices.

Indexed as

Amino AcidsNicotianaNitrogenTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksMetabolic Networks and PathwaysPlant LeavesPlant RootsAmino AcidsNitrogenTobacco (Nicotiana tabacum L.), nitrogen morphologies, amino acid pathwaysTranscriptome analysisWGCNA

Identifiers

PMID40148814
PMCPMC11948770

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.