Evidence map›Paper›PMID 40148435›Full record

ArticleScientific reports2025

Virulence and resistance gene analysis of Rothia nasimurium by whole gene sequencing.

Ziyue Lu, Sun He, Ali Adnan, Wenyu Fan, Jinliang Sheng, Yanming Sun, Yanbing Zhang, Gang Wang

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ziyue LuCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China.
Sun HeTECON Pharmaceutical Co.,Ltd, Urumqi, 830011, China.
Ali AdnanCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China.
Wenyu FanCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China.
Jinliang ShengCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China.
Yanming SunCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China.
Yanbing ZhangCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China. zhangyanbing@shzu.edu.cn.
Gang WangTECON Pharmaceutical Co.,Ltd, Urumqi, 830011, China. wanggang@tecon-bio.com.

Funding

High-level Talents of Shihezi University RCZK202043National Natural Science Foundation of China 32360901, 32060133Natural Science Foundation of Xinjiang Uygur Autonomous Region 2022D01B197, 2023LQ03003Xinjiang Corps Guiding Science and Technology Plan Project 2023ZD042Xinjiang Production & Construction Corps Key Laboratory of Animal bio-medicine FMOF2023002
6 · The paper itself

Abstract

A batch of sheep in a sheep farm in Xinjiang, China, died suddenly; a bacterial strain was isolated from the abdominal fluid of the sick and dead sheep, and identified as Rothia nasimurium by 16S sequencing, and the strain Y1 was subjected to drug sensitivity test with Draft gene sequencing. The results of the drug sensitivity test revealed the strain's resistance to 9 antibiotics, with sensitivity exhibited solely towards amikacin and vancomycin. Phylogenetic tree analysis confirmed that it was related to Rothia nasimurium strain E1706032 and Rothia sp.SD9660Na. The draft genome sequencing results showed that the total length of the gene was 2,387,685 bp, and the GC content was 59.35%. VFDB database analysis identified 112 annotated genes in Y1, including those related to bacterial adhesion, regulation, nutrient metabolism factors, hemolysin, immunomodulation, and iron uptake proteins. CARD database analysis showed that Y1 was resistant to a variety of antibiotics such as glycopeptides, tetracyclines, aminoglycosides and polypeptides. Animal pathogenicity tests have shown that Y1 can cause lung damage, coat loss and skin inflammation. This study revealed a series of virulence and drug resistance genes and pathogenicity of Y1. The results of this study have important reference value for prevention and treatment of Rothia infection in the future.

Indexed as

Anti-Bacterial AgentsDrug Resistance, BacterialMicrococcaceaeSheep DiseasesAmikacinAnimalsChinaDrug Resistance, Multiple, BacterialPhylogenyRNA, Ribosomal, 16SSheepVancomycinVirulenceVirulence FactorsWhole Genome SequencingAmikacinAnti-Bacterial AgentsRNA, Ribosomal, 16SVancomycinVirulence FactorsDraft genome sequencingPathogenicityResistance genesRothiaRothia nasimuriumSheepVirulence genes

Identifiers

PMID40148435
PMCPMC11950441

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.