Evidence map›Paper›PMID 40147439›Full record

ArticleCell genomics2025

Conservation of dichromatin organization along regional centromeres.

Danilo Dubocanin, Gabrielle A Hartley, Adriana E Sedeño Cortés, Yizi Mao, Sabrine Hedouin, Jane Ranchalis, Aman Agarwal, Glennis A Logsdon, Katherine M Munson, Taylor Real and 5 more

Abstract read
In one paragraph

Article in Cell genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Article
  11. Sustainable integrative cell biology: CENP-C is guilty by association.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  12. Article
  13. Revisiting the question: When is a centromere not a kinetochore?Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  14. Article
  15. Protamine lacunae preserve the paternal chromatin landscape in sperm.bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Centromeres drive and take a break.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  18. Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  19. CENP-A and centromere evolution in equids.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  20. A haplotype-resolved view of human gene regulation.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Danilo DubocaninDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Gabrielle A HartleyInstitute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Adriana E Sedeño CortésDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Yizi MaoDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Sabrine HedouinFred Hutchinson Cancer Center, Basic Sciences Division, Seattle, WA 98109, USA.
Jane RanchalisDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Aman AgarwalDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Glennis A LogsdonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Katherine M MunsonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Taylor RealDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Benjamin J MalloryDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Evan E EichlerDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.
Sue BigginsHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Rachel J O'NeillInstitute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269, USA; Department of Genomics and Genome Sciences, UConn Health, Farmington, CT 06269, USA.
Andrew B StergachisDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA 98195, USA. Electronic address: absterga@uw.edu.

Funding

Investigating the contribution of non-coding genetic variation to rare disordersDP5OD029630 · OD · UNIVERSITY OF WASHINGTON · PI STERGACHIS, ANDREW BEN · 2020 to 2024
$1.9M
Mechanisms underlying chromosome segregationR35GM149357 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI Susan Biggins · 2023 to 2026
$1.5M
Tooling for accurately studying the epigenome along the human pangenome referenceU01HG013744 · NHGRI · UNIVERSITY OF WASHINGTON · PI STERGACHIS, ANDREW BEN · 2024 to 2024
$1.4M
NHGRI NIH HHS U01 HG013744NIGMS NIH HHS R35 GM149357NIH HHS DP5 OD029630
6 · The paper itself

Abstract

The attachment of the kinetochore to the centromere is essential for genome maintenance, yet the highly repetitive nature of satellite regional centromeres limits our understanding of their chromatin organization. We demonstrate that single-molecule chromatin fiber sequencing (Fiber-seq) can uniquely co-resolve kinetochore and surrounding chromatin architectures along point centromeres, revealing largely homogeneous single-molecule kinetochore occupancy. In contrast, the application of Fiber-seq to regional centromeres exposed marked per-molecule heterogeneity in their chromatin organization. Regional centromere cores uniquely contain a dichotomous chromatin organization (dichromatin) composed of compacted nucleosome arrays punctuated with highly accessible chromatin patches. CENP-B occupancy phases dichromatin to the underlying alpha-satellite repeat within centromere cores but is not necessary for dichromatin formation. Centromere core dichromatin is conserved between humans and primates, including along regional centromeres lacking satellite repeats. Overall, the chromatin organization of regional centromeres is defined by marked per-molecule heterogeneity, buffering kinetochore attachment against sequence and structural variability within regional centromeres.

Indexed as

CentromereChromatinAnimalsCentromere Protein BDNA, SatelliteHumansKinetochoresNucleosomesCentromere Protein BChromatinDNA, SatelliteNucleosomesAlpha-satelliteCENP-BcentromerechromatinFiber-seqkinetochoresingle molecule

Identifiers

PMID40147439
PMCPMC12008808

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.