Evidence map›Paper›PMID 40146832›Full record

ArticleScience (New York, N.Y.)2025

Running a genetic stop sign accelerates oxygen metabolism and energy production in horses.

Gianni M Castiglione, Xin Chen, Zhenhua Xu, Nadir H Dbouk, Anamika A Bose, David Carmona-Berrio, Emiliana E Chi, Lingli Zhou, Tatiana N Boronina, Robert N Cole and 9 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Gianni M CastiglioneDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-0768-4236
Xin Chen *Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0009-0006-1740-3086
Zhenhua Xu *Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-3854-8616
Nadir H Dbouk *Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0001-8755-0491
Anamika A Bose *Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0009-0008-1237-0320
David Carmona-BerrioDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-5405-3306
Emiliana E ChiDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0009-0008-9700-7941
Lingli ZhouDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-9321-9348
Tatiana N BoroninaMass Spectrometry and Proteomics Facility, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-5270-3849
Robert N ColeMass Spectrometry and Proteomics Facility, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-3096-4754
Shirley WuDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0009-0002-4074-1690
Abby D LiuDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-0411-1491
Thalia D LiuDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-8587-0691
Haining LuDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-5209-8669
Ted KalbfleischDepartment of Veterinary Science, Gluck Equine Research Center, University of Kentucky, Lexington, KY, USA.ORCID 0000-0002-2370-8189
David RinkerDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0001-5894-7633
Antonis RokasDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-7248-6551
Kyla OrtvedDepartment of Clinical Studies, New Bolton Center, University of Pennsylvania, Kennett Square, PA, USA.ORCID 0000-0003-0398-2444
Elia J DuhDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-1917-373X

Funding

Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI JEFFREY MUMM · 1985 to 2026
$22.1M
Regulation of diabetic retinopathy by Nrf2R01EY022383 · NEI · JOHNS HOPKINS UNIVERSITY · PI DUH, ELIA J · 2012 to 2020
$3.8M
Role of Nrf2 in retinal vascularization and ROPR01EY022683 · NEI · JOHNS HOPKINS UNIVERSITY · PI DUH, ELIA J · 2012 to 2021
$3.6M
Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR01AI153356 · NIAID · VANDERBILT UNIVERSITY · PI Antonis Rokas · 2022 to 2026
$3.5M
Cancer Pharmacologist and HTS ScientistR50CA211206 · NCI · VANDERBILT UNIVERSITY · PI Joshua A. Bauer · 2016 to 2026
$1.8M
Evolutionary Mechanisms of Enhanced Environmental Stress ResistanceR35GM155367 · NIGMS · VANDERBILT UNIVERSITY · PI Gianni Marcello Castiglione · 2024 to 2026
$1.2M
Agilent Seahorse XF Pro AnalyzerS10OD036367 · OD · VANDERBILT UNIVERSITY · PI BAUER, JOSHUA A. · 2024 to 2024
$247k
XFe96 AnalyzerS10OD018015 · OD · VANDERBILT UNIVERSITY · PI LANNIGAN, DEBORAH · 2014 to 2014
$200k
NCI NIH HHS R50 CA211206NEI NIH HHS P30 EY001765NEI NIH HHS R01 EY022383NEI NIH HHS R01 EY022683NIAID NIH HHS R01 AI153356NIGMS NIH HHS R35 GM155367NIH HHS S10 OD018015NIH HHS S10 OD036367
6 · The paper itself

Abstract

Horses are among nature's greatest athletes, yet the ancestral molecular adaptations fueling their energy demands are poorly understood. Within a clinically important pathway regulating redox and metabolic homeostasis (NRF2/KEAP1), we discovered an ancient mutation-conserved in all extant equids-that increases mitochondrial respiration while decreasing tissue-damaging oxidative stress. This mutation is a de novo premature opal stop codon in KEAP1 that is translationally recoded into a cysteine through previously unknown mechanisms, producing an R15C mutation in KEAP1 that is more sensitive to electrophiles and reactive oxygen species. This recoding enables increased NRF2 activity, which enhances mitochondrial adenosine 5'-triphosphate production and cellular resistance to oxidative damage. Our study illustrates how recoding of a de novo stop codon, a strategy thought restricted to viruses, can facilitate adaptation in vertebrates.

Indexed as

Codon, NonsenseCodon, TerminatorEnergy MetabolismHorsesKelch-Like ECH-Associated Protein 1OxygenAdenosine TriphosphateAnimalsMitochondriaMutationNF-E2-Related Factor 2Oxidation-ReductionOxidative StressReactive Oxygen SpeciesRunningAdenosine TriphosphateCodon, NonsenseCodon, TerminatorKelch-Like ECH-Associated Protein 1NF-E2-Related Factor 2OxygenReactive Oxygen Species

Identifiers

PMID40146832
PMCPMC12338053

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.