Evidence map›Paper›PMID 40141199›Full record

ArticleInternational journal of molecular sciences2025

A DNA-Based Plasmonic Nano-Ruler.

Aura Cencini, Mary Bortoluzzi, Graziano Rilievo, Federica Tonolo, Fabio Vianello, Massimiliano Magro, Alessandro Cecconello

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Plasmonic Nano-bolas Hunt DNA Targets.ACS nanoscience Au · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aura CenciniDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0009-0004-1830-9062
Mary BortoluzziDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0009-0008-4573-6931
Graziano RilievoDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0000-0003-4098-5636
Federica TonoloDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0000-0002-7780-8994
Fabio VianelloDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0000-0002-4874-7205
Massimiliano MagroDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0000-0002-4644-004X
Alessandro CecconelloDepartment of Comparative Biomedicine and Food Science, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy.ORCID 0000-0002-7075-2801

Funding

Italian Ministry of Education, University and Research (MIUR) Dipartimento di Eccellenza-SentinelItalian Ministry of Education, University and Research (MIUR) "iNEST - Interconnected Nord-Est Innovation ECS00000043"Italian Ministry of Education, University and Research (MIUR) PNRR Young Researches Project "CirculaR Economy to enhance the sustainability of agri-food Chain: An innovative approach to transform food wastE into functional foods"Italian Ministry of Education, University and Research (MIUR) REACT-EU PON "Ricerca e Innovazione 2014-2020"University of Padua (Italy) STARS@UNIPD Strarting Grant 2024
6 · The paper itself

Abstract

DNA is an exceptional building block for the fabrication of dynamic supramolecular systems with switchable geometries. Here, a self-assembled, tunable plasmonic-fluorescent nanostructure was developed. A precise sliding motion mechanism was operated through the control of strand displacement reactions, shifting two single-strand DNA (ssDNA) rails connected by a ssDNA quasi-ring structure. The system was reconfigured as a nano-mechanical structure, generating six discrete configurations, and setting specific distances between a tethered gold nanoparticle (AuNP) and a fluorophore, Sulfo-Cyanine3 (Cy3). Each configuration produced a distinct fluorescence emission intensity via plasmonic quenching/enhancement effects, and therefore the structure behaved as a nano-ruler. To optimize the system, the reversible distance-dependent fluorescence quenching or enhancement phenomena were investigated by testing AuNPs with diameters of 5, 10, and 15 nm, yielding the best performances with 10 nm AuNPs. Furthermore, a geometric model of the system was produced, confirming the observed results. The fluorophore-plasmonic surface positioning, conferred by the DNA ruler, led to a finite state nano-machine with six alternative signal outputs. This mechanism, working as a fluorescent reporter, could find application in a multiple-responsive detection system of single-strand nucleic acids, such as viruses or microRNAs.

Indexed as

DNADNA, Single-StrandedMetal NanoparticlesNanostructuresNanotechnologyCarbocyaninesFluorescent DyesGoldCarbocyaninesDNADNA, Single-StrandedFluorescent DyesGoldDNA nanotechnologiesfluorescenceplasmonic nanoparticlesquenching–enhancingself-assembly

Identifiers

PMID40141199
PMCPMC11942521

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.