Evidence map›Paper›PMID 40140540›Full record

ArticleCommunications biology2025

Microtubules as a versatile reference standard for expansion microscopy.

Rajdeep Chowdhury, Tiago Mimoso, Abed Alrahman Chouaib, Nikolaos Mougios, Donatus Krah, Felipe Opazo, Sarah Köster, Silvio O Rizzoli, Ali H Shaib

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. ONE microscopy.Nature protocols · 2026
    Review
  2. Article
  3. Article
  4. Thousandfold Expansion Microscopy.bioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Organization of Myosin H in the Apical Complex ofbioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rajdeep Chowdhury *Department of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Tiago Mimoso *Institute for X-Ray Physics, University of Göttingen, Göttingen, Germany.
Abed Alrahman ChouaibDepartment of Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, Homburg, Germany.
Nikolaos MougiosDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Donatus KrahDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Felipe OpazoDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0002-4968-9713
Sarah KösterInstitute for X-Ray Physics, University of Göttingen, Göttingen, Germany. sarah.koester@uni-goettingen.de.ORCID http://orcid.org/0000-0002-0009-1024
Silvio O RizzoliDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany. srizzol@gwdg.de.ORCID http://orcid.org/0000-0002-1667-7839
Ali H ShaibDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany. ali.shaib@med.uni-goettingen.de.ORCID http://orcid.org/0009-0007-2656-3820

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 2067/1-390729940
6 · The paper itself

Abstract

Expansion microscopy (ExM) is continually improving, and new ExM variants need to be validated on well-defined biological structures. There is no consensus on validation structures for ExM, especially as nuclear pore complexes or DNA nanorulers are not popular for ExM studies. Here we propose that microtubules should be used for ExM validation. The diameter of microtubules immunostained using primary and secondary antibodies is sufficiently large for the validation of techniques with resolutions better than 50 nm. For techniques with higher precision (up to ~10 nm), microtubules can be assembled and imaged in vitro, using a protocol that we introduce here. Alternatively, a cellular extraction procedure can be employed, followed by labeling the peptide chains of the tubulin molecules with NHS-ester fluorophores. Finally, for nanometer-scale techniques, single tubulin molecules can be analyzed. We conclude that microtubules are valuable structures for the validation of ExM and related technologies.

Indexed as

MicroscopyMicrotubulesAnimalsHumansMicroscopy, FluorescenceReference StandardsTubulinTubulin

Identifiers

PMID40140540
PMCPMC11947214

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.