Evidence map›Paper›PMID 40140403›Full record

ArticleScientific data2025

High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829).

Xiaomei Chen, Wentao Han, Xinyao Chang, Caiyin Tang, Kai Chen, Lisui Bao, Lingling Zhang, Jingjie Hu, Shi Wang, Zhenmin Bao

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Zoological studies · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xiaomei Chen *Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.
Wentao Han *Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.ORCID http://orcid.org/0000-0003-1423-3975
Xinyao ChangKey Laboratory of Tropical Aquatic Germplasm of Hainan Province & MOE Key Laboratory of Marine Genetics and Breeding, Ocean University of China, Sanya/Qingdao, China.
Caiyin TangKey Laboratory of Tropical Aquatic Germplasm of Hainan Province & MOE Key Laboratory of Marine Genetics and Breeding, Ocean University of China, Sanya/Qingdao, China.
Kai ChenSouthern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.ORCID http://orcid.org/0000-0001-7230-6488
Lisui BaoInstitute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, China.
Lingling ZhangKey Laboratory of Tropical Aquatic Germplasm of Hainan Province & MOE Key Laboratory of Marine Genetics and Breeding, Ocean University of China, Sanya/Qingdao, China.
Jingjie HuSouthern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.
Shi WangSouthern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China. swang@ouc.edu.cn.ORCID http://orcid.org/0000-0002-9571-9864
Zhenmin BaoSouthern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China. zmbao@ouc.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact.

Indexed as

AnthozoaGenomeAnimalsCoral Reefs

Identifiers

PMID40140403
PMCPMC11947264

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.