Evidence map›Paper›PMID 40140220›Full record

ArticlePlant molecular biology2025

Physiological and compensatory roles of three starch-branching enzymes in different rice organs.

Satoko Miura, Naoko Crofts, Nana Koyama, Yuko Hosaka, Ryutaro Morita, Misato Abe, Yasunori Nakamura, Naoko Fujita

Abstract read
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In one paragraph

Article in Plant molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Satoko MiuraDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.ORCID http://orcid.org/0009-0004-3825-2892
Naoko CroftsDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.ORCID http://orcid.org/0000-0002-6792-2232
Nana KoyamaDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Yuko HosakaDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Ryutaro MoritaGraduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo, 113-8657, Japan.
Misato AbeDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Yasunori NakamuraDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Naoko FujitaDepartment of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan. naokof@akita-pu.ac.jp.ORCID http://orcid.org/0000-0001-7432-4786

Funding

Japan Society for the Promotion of Science 18K14438Japan Society for the Promotion of Science 20K05961Japan Society for the Promotion of Science 23K13931the Science and Technology Research Promotion Program for Agriculture, Forestry and Fisheries and Food Industry 28029C
6 · The paper itself

Abstract

Starch-branching enzymes (BEs) generate amylopectin branches in starch, and three isoforms are found in the rice genome. BEI and BEIIa are expressed ubiquitously, on the other hand BEIIb is exclusively expressed in the endosperm. The loss of BEIIb generates opaque seeds with drastically reduced short amylopectin chains, whereas the loss of BEI slightly reduces long amylopectin chains. However, the loss of BEIIa has no obvious effect on amylopectin structure in the endosperm. Little is known about these isozymes' specific and compensatory roles in other tissues. In this study, all three combinations of double mutants were generated, and their starch properties were analyzed to reveal the function of the solely remaining isozyme, deduce the compensatory function of the missing isozymes, and clarify their roles in different organs. be2a be2b displayed severe sterility and hindered starch synthesis in the endosperm; be1 be2a displayed only minor alterations in endosperm starch; but be1 be2b displayed a drastic increase in amylose content in the endosperm. These results indicate that BEIIa has some compensatory function for BEIIb, and BEI alone is insufficient. Additionally, BEIIa or BEIIb is necessary for endosperm formation. Unlike the endosperm, short amylopectin chains were drastically reduced in the leaf sheath of be1 be2a and be2a be2b, and amylose content was drastically increased in the leaf sheath of be1 be2a and be2a be2b but not be1 be2b. These results indicate that BEIIa has a major role in the leaf sheath, and the generation of short amylopectin chains by BEII can be partially compensated by BEI.

Indexed as

1,4-alpha-Glucan Branching EnzymeOryzaPlant ProteinsAmylopectinAmyloseEndospermGene Expression Regulation, PlantIsoenzymesMutationSeedsStarch1,4-alpha-Glucan Branching EnzymeAmylopectinAmyloseIsoenzymesPlant ProteinsStarchAmylopectinEndospermLeaf sheathRiceStarch-branching enzymes

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.