Evidence map›Paper›PMID 40140149›Full record

ArticleMolecular biology reports2025

Characterization and molecular dynamics simulation of Lk2 lipase expressed in Pichia pastoris.

Annisa Ananda, Leyla Novita Brigiyanti, Made Puspasari Widhiastuty, Titin Haryati, Suharti, Ilma Fauziah Ma'ruf, Akhmaloka

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Article in Molecular biology reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Annisa AnandaBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia.
Leyla Novita BrigiyantiBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia.
Made Puspasari WidhiastutyBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia.
Titin HaryatiBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia.
SuhartiDepartment of Chemistry, Faculty of Science and Computer, Universitas Pertamina, Jl. Teuku Nyak Arief, South Jakarta, Jakarta, 12220, Indonesia.
Ilma Fauziah Ma'rufBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia.
AkhmalokaBiochemistry and Biomolecule Engineering Research Group, Faculty of Mathematics and Natural Science, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung, West Java, 40132, Indonesia. loka@itb.ac.id.

Funding

RIIM Research Project Program, National Research and Innovation 12/II.7/HK/2023
6 · The paper itself

Abstract

backgroundLipase is a versatile enzyme that serves as a biocatalyst in various industries. lk2 was successfully isolated from household waste compost through a metagenomic approach. MATERIALS AND

methodslk2 from plasmid pPICZαA- lk2 was integrated into chromosomes of Pichia. pastoris GS115 using the electroporation method. Lk2 was expressed on Pichia. pastoris by methanol induction. The enzyme was purified through Ion Metal Affinity Chromatography Ni-NTA. The purified enzyme was characterized based on hydrolytic activity and in silico analysis.

resultsLk2 was successfully expressed as an extracellular protein in Pichia pastoris. The cell-free supernatant exhibited hydrolysis activity to para-nitro phenyl laurate. The purified protein showed 15 times activity compared to cell-free supernatant and the size at around 35 kDa following gel electrophoresis. The enzyme showed optimum activity at 60

conclusionLk2 belongs to a thermotolerant and alkaline lipase, prefers a medium-length carbon chain as substrate and is confirmed by in silico analysis. Several amino acid residues were probed to be important for substrate binding residues. The data give valuable information to develop the possibility of Lk2 as an industry's enzyme.

Indexed as

LipasePichiaCatalytic DomainMolecular Docking SimulationMolecular Dynamics SimulationRecombinant ProteinsSaccharomycetalesSubstrate SpecificityLipaseRecombinant ProteinsDocking analysisLk2Pichia pastorisThermostable

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.