Evidence map›Paper›PMID 40133517›Full record

ArticleNature biotechnology2026

Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA.

Yuhang Fan, Wenchao Xu, Bao-Qing Gao, Huichao Qin, Xiaoyi Wu, Jia Wei, Qingyang Ni, Lina Zhou, Jiangchao Xiang, Jing Wu and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yuhang Fan *Gene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Wenchao Xu *Gene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Bao-Qing Gao *Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
Huichao QinGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Xiaoyi WuGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Jia WeiCenter for Molecular Medicine, Children's Hospital of Fudan University and Shanghai Key Laboratory of Medical Epigenetics, International Laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Qingyang NiGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0009-0001-7727-4080
Lina ZhouGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Jiangchao XiangGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0002-9918-4967
Jing WuGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Bei YangGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0001-5389-3859
Li YangCenter for Molecular Medicine, Children's Hospital of Fudan University and Shanghai Key Laboratory of Medical Epigenetics, International Laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0001-8833-7473
Jia ChenGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai, China. chenjia@shanghaitech.edu.cn.ORCID http://orcid.org/0000-0002-4242-2899

Funding

Ministry of Agriculture and Rural Affairs of the People's Republic of China (MOA) NK2022010207Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2023YFC3403402Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2023ZD0500501Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2024YFA1803301Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2024YFC3405902National Natural Science Foundation of China (National Science Foundation of China) 32070170National Natural Science Foundation of China (National Science Foundation of China) 32371514National Natural Science Foundation of China (National Science Foundation of China) 32430018Natural Science Foundation of Shanghai (Natural Science Foundation of Shanghai Municipality) 23ZR1442500Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 23DX1900102Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 23JS1400300Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 23XD1422500
6 · The paper itself

Abstract

Transcription activator-like effector-linked deaminases (TALEDs) use their single-stranded DNA (ssDNA)-specific adenosine deaminase TadA8e to mediate A-to-G editing in mitochondrial DNA (mtDNA). The working mechanism of this process is unknown, hindering the development of more effective TALEDs. Here we reveal that TALED-mediated A-to-G editing relies on the formation of an ssDNA region through base excision repair (BER), which is triggered by double-stranded DNA-specific cytidine deaminase (DddA)-induced C-to-U deamination. We develop a series of enhanced TALEDs (eTALED6s) with increased editing efficiency by replacing DddA with the high-activity variant DddA6 and fusing human uracil DNA glycosylase to TadA8e. By further engineering TadA8e, the resulting eTALED6Rs induces efficient on-target editing with reduced bystander editing and off-target editing at the DNA and RNA levels. Lastly, we use eTALED6 and eTALED6R to install a pathogenic mutation in mtDNA. Revealing the mechanism of TALED-mediated A-to-G editing demonstrates that enhancing BER increases editing efficiency.

Indexed as

AdenineDNA, MitochondrialDNA RepairGene EditingAdenosine DeaminaseCytidine DeaminaseDNA, Single-StrandedExcision RepairHEK293 CellsHumansAdenineAdenosine DeaminaseCytidine DeaminaseDNA, MitochondrialDNA, Single-Stranded

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.