Evidence map›Paper›PMID 40133308›Full record

ArticleNature communications2025

Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity.

Chuannan Fan, Qian Wang, Peter H L Krijger, Davy Cats, Miriam Selle, Olga Khorosjutina, Soniya Dhanjal, Bernhard Schmierer, Hailiang Mei, Wouter de Laat and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chuannan Fan *Oncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID http://orcid.org/0000-0001-8754-4913
Qian Wang *Oncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands. q.wang@lumc.nl.ORCID http://orcid.org/0000-0002-5196-4972
Peter H L KrijgerOncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-1702-348X
Davy CatsDepartment of Biomedical Data Sciences, Sequencing Analysis Support Core, Leiden University Medical Center, Leiden, The Netherlands.ORCID http://orcid.org/0000-0001-9684-220X
Miriam SelleDepartment of Medical Biochemistry and Biophysics, SciLifeLab and Karolinska Institute, Solna, Sweden.
Olga KhorosjutinaDepartment of Medical Biochemistry and Biophysics, SciLifeLab and Karolinska Institute, Solna, Sweden.ORCID http://orcid.org/0009-0001-0786-0260
Soniya DhanjalDepartment of Medical Biochemistry and Biophysics, SciLifeLab and Karolinska Institute, Solna, Sweden.
Bernhard SchmiererDepartment of Medical Biochemistry and Biophysics, SciLifeLab and Karolinska Institute, Solna, Sweden.ORCID http://orcid.org/0000-0002-9082-7022
Hailiang MeiDepartment of Biomedical Data Sciences, Sequencing Analysis Support Core, Leiden University Medical Center, Leiden, The Netherlands.
Wouter de LaatOncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-5603-0095
Peter Ten DijkeOncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands. p.ten_dijke@lumc.nl.ORCID http://orcid.org/0000-0002-7234-342X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enhancer RNAs (eRNAs) are a pivotal class of enhancer-derived non-coding RNAs that drive gene expression. Here we identify the SNAI1 enhancer RNA (SNAI1e; SCREEM2) as a key activator of SNAI1 expression and a potent enforcer of transforming growth factor-β (TGF-β)/SMAD signaling in cancer cells. SNAI1e depletion impairs TGF-β-induced epithelial-mesenchymal transition (EMT), migration, in vivo extravasation, stemness, and chemotherapy resistance in breast cancer cells. SNAI1e functions as an eRNA to cis-regulate SNAI1 enhancer activity by binding to and strengthening the enrichment of the transcriptional co-activator bromodomain containing protein 4 (BRD4) at the local enhancer. SNAI1e selectively promotes the expression of SNAI1, which encodes the EMT transcription factor SNAI1. Furthermore, we reveal that SNAI1 interacts with and anchors the inhibitory SMAD7 in the nucleus, and thereby prevents TGF-β type I receptor (TβRI) polyubiquitination and proteasomal degradation. Our findings establish SNAI1e as a critical driver of SNAI1 expression and TGF-β-induced cell plasticity.

Indexed as

Breast NeoplasmsCell PlasticityEnhancer Elements, GeneticSnail Family Transcription FactorsAnimalsBromodomain Containing ProteinsCell Cycle ProteinsCell Line, TumorCell MovementEnhancer RNAsEpithelial-Mesenchymal TransitionFemaleGene Expression Regulation, NeoplasticHumansMiceNuclear ProteinsBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsEnhancer RNAsNuclear ProteinsReceptor, Transforming Growth Factor-beta Type ISmad7 ProteinSMAD7 protein, humanSNAI1 protein, humanSnail Family Transcription FactorsTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID40133308
PMCPMC11937597

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.