Evidence map›Paper›PMID 40133269›Full record

ArticleBiochemistry2025

Regulatory Genes as Beacons for Discovery and Prioritization of Biosynthetic Gene Clusters in

Hannah E Augustijn, Daan van Nassauw, Simona Cernat, Zachary L Reitz, Gilles P van Wezel, Marnix H Medema

Abstract read
In one paragraph

Article in Biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. DAP-seq Reveals Cluster-Situated Regulator Control of NumerousbioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Modulating Complex Secondary Metabolism inFood technology and biotechnology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hannah E AugustijnBioinformatics Group, Wageningen University, Wageningen 6708 PB, The Netherlands.
Daan van NassauwBioinformatics Group, Wageningen University, Wageningen 6708 PB, The Netherlands.
Simona CernatMolecular Biotechnology, Institute of Biology, Leiden University, Leiden 2333 BE, The Netherlands.
Zachary L ReitzBioinformatics Group, Wageningen University, Wageningen 6708 PB, The Netherlands.ORCID 0000-0003-1964-8221
Gilles P van WezelMolecular Biotechnology, Institute of Biology, Leiden University, Leiden 2333 BE, The Netherlands.ORCID 0000-0003-0341-1561
Marnix H MedemaBioinformatics Group, Wageningen University, Wageningen 6708 PB, The Netherlands.ORCID 0000-0002-2191-2821

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Actinobacteria are renowned for their ability to produce a wide range of bioactive molecules, including many anticancer compounds and antibiotics that are critical in the battle against antimicrobial resistance. Despite identification of a vast array of biosynthetic gene clusters (BGCs) through genome mining, much of this biosynthetic potential remains unexplored, partially due to the fact that many remain silent or cryptic under typical laboratory conditions. Regulatory networks can provide clues to the location of yet undiscovered gene cluster families or be leveraged to predict their expression. Here, we investigate the associations between regulatory genes and BGCs to uncover their predictive capabilities in discovering and prioritizing gene clusters for downstream wet-lab validation. By analyzing the protein domain architectures of 128,993 potential regulators derived from 440 complete

Indexed as

Bacterial ProteinsBiosynthetic PathwaysGenes, RegulatorMultigene FamilyStreptomycesAnti-Bacterial AgentsGene Expression Regulation, BacterialAnti-Bacterial AgentsBacterial Proteins

Identifiers

PMID40133269
PMCPMC12224297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.