Evidence map›Paper›PMID 40128643›Full record

ArticleBMC genomic data2025

A high-quality chromosome-level genome assembly of Antiaris toxicaria.

Weicheng Huang, Jiaxin Xiang, Yamei Ding, Wanzhen Liu, Ni Fang, Yongmei Xiong, Seping Dai, Hui Yu

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Weicheng HuangKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
Jiaxin XiangDepartment of Computer Science, Hong Kong Baptist University, Kowloon, 999077, Hong Kong, China.
Yamei DingKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
Wanzhen LiuKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
Ni FangKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
Yongmei XiongGuangzhou Institute of Forestry and Landscape Architecture, Guanzhou, 510405, China.
Seping DaiGuangzhou Institute of Forestry and Landscape Architecture, Guanzhou, 510405, China. gzifla_dsp@gz.gov.cn.
Hui YuKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China. yuhui@scib.ac.cn.

Funding

Guangzhou Ecological Landscape Technology Collaborative Innovation Center 202206010058Science and Technology Projects in Guangzhou E33309the Guangdong Flagship Project of Basic and Applied Basic Research 2023B0303050001
6 · The paper itself

Abstract

objectivesAntiaris toxicaria is a tall tree belonging to the Moraceae family, known for its medicinal value. Its latex contains various cardiac glycosides, which hold significant research and potential application value. However, the lack of genomic resources for A. toxicaria currently hinders molecular genetic studies on its medicinal components. For its effective conservation and elucidation of the distinctive genetic traits of and medical components, we present its chromosome-level genome assembly. DATA DESCRIPTION: Here, we assembled two haplotypes of A. toxicaria, including a 671.73-Mb HapA subgenome containing 27,213 genes and a 666.41-Mb HapB subgenome containing 28,840 genes. Their contig N50 sizes were 90.18 and 90.29 Mb, respectively. The transposable elements represented 61.15% and 64.13% of the total assembled genome in HapA and HapB subgenome, respectively. A total of 27,213 and 28,840 genes were predicted in the two haplotypes. Hopefully, this chromosome-level genome of A. toxicaria will provide a valuable resource to enhance understanding of the biosynthesis of medicinal compounds.

Indexed as

Chromosomes, PlantGenome, PlantDNA Transposable ElementsHaplotypesDNA Transposable ElementsAntiaris toxicariaGenome assemblyHi-CHiFiONT ultralongTranscriptome

Identifiers

PMID40128643
PMCPMC11934813

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