Evidence map›Paper›PMID 40128104›Full record

ArticleClinical and experimental immunology2025

Comprehensive flow cytometry-based diagnosis of XIAP deficiency.

Dan Tomomasa, Madoka Nishimura, Ayami Ohya, Kay Tanita, Ryosuke Wakatsuki, Ryohei Watanabe, Satoshi Miyamoto, Akihiro Hoshino, Takahiro Kamiya, Takeshi Isoda and 19 more

Abstract read
In one paragraph

Article in Clinical and experimental immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Rapid flow cytometric diagnosis of XIAP deficiency.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Dan TomomasaDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Madoka NishimuraDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Ayami OhyaDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Kay TanitaDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Ryosuke WakatsukiDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Ryohei WatanabeDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Satoshi MiyamotoDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Akihiro HoshinoDepartment of Child Health and Development, Graduate School of Medical and Dental Sciences, Institute of Science Tokyo, Tokyo, Japan.
Takahiro KamiyaDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Takeshi IsodaDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Shuya KanekoDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Masaki ShimizuDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.ORCID 0000-0003-1077-7772
Atsushi HijikataSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.ORCID 0000-0003-4297-8368
Katsuhide EguchiDepartment of Pediatrics, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Masataka IshimuraDepartment of Pediatrics, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Yukako MaedaDepartment of Pediatrics, Faculty of Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Kazushi IzawaDepartment of Pediatrics, Faculty of Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Takaaki MeguroDepartment of Allergy and Clinical Immunology, Shizuoka Children's Hospital, Shizuoka, Japan.
Kosuke FujimotoDepartment of Surgery, Nara Medical University, Nara, Japan.
Etsuko Ishikita-MurayamaDepartment of Hematology/Oncology, Gunma Children's Medical Center, Gunma, Japan.
Kyogo SuzukiDepartment of Hematology and Oncology, Tokyo Metropolitan Children's Medical Center, Tokyo, Japan.
Eri OkuraDepartment of Pediatrics, Shinshu University School of Medicine, Nagano, Japan.
Tomoko UeharaDepartment of Pediatrics, Naha City Hospital, Okinawa, Japan.
Tomotada TakayamaGeneral Pediatrics, Okinawa Prefectural Nanbu Medical Center & Children's Medical Center, Okinawa, Japan.
Satoshi OkadaDepartment of Pediatrics, Hiroshima University Graduate School of Biomedical and Health Sciences, Hiroshima, Japan.ORCID 0000-0002-4622-5657
Masatoshi TakagiDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
Tomohiro MorioDepartment of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.ORCID 0000-0002-9259-1025
Rebecca A MarshDivision of Bone Marrow Transplantation and Immune Deficiency, Cancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Hirokazu KaneganeDepartment of Child Health and Development, Graduate School of Medical and Dental Sciences, Institute of Science Tokyo, Tokyo, Japan.ORCID 0000-0002-8696-9378

Funding

Japan Society for the Promotion of Science 22K07887
6 · The paper itself

Abstract

Deficiency of X-linked inhibitor of apoptosis protein (XIAP) is an X-linked recessive inborn error of immunity characterized by abnormal immune responses leading to inflammatory bowel disease and hemophagocytic lymphohistiocytosis. Although XIAP protein expression analysis by flow cytometry (XIAP flow) is commonly used to diagnose XIAP deficiency, certain variants may not affect the protein expression, thereby complicating the diagnostic process. XIAP is crucial for the nucleotide-binding and oligomerization domain 2 (NOD2) signaling pathway. In this study, we aimed to perform a comprehensive analysis of nine patients diagnosed with XIAP deficiency through genetic testing. In addition to XIAP flow, we employed a previously reported method utilizing muramyl dipeptide (MDP) stimulation, a specific agonist of NOD2, to quantitatively evaluate the downstream tumor necrosis factor-alpha (TNFα) production by flow cytometry in patient monocytes (MDP flow). The median mean fluorescence intensity in healthy controls with XIAP flow was 711 (95% confidence interval [CI], 653-815) compared to 195 (95% CI, 161-386) in patients with XIAP deficiency (P < 0.0001). The median percentage of TNFα-producing monocytes in controls with MDP flow was 29.1% (95% CI, 19.6-53.7), while in patients it was 0.34% (95% CI, 0.18-0.82) (P = 0.0008). The receiver operating characteristic curves demonstrated that both XIAP flow and MDP flow exhibited 100% sensitivity and specificity. Taken together, combining XIAP flow and MDP flow analyses allows for a highly accurate diagnosis.

Indexed as

Flow CytometryGenetic Diseases, X-LinkedLymphohistiocytosis, HemophagocyticX-Linked Inhibitor of Apoptosis ProteinAcetylmuramyl-Alanyl-IsoglutamineAdolescentAdultChildChild, PreschoolFemaleHumansInfantMaleMonocytesNod2 Signaling Adaptor ProteinTumor Necrosis Factor-alphaAcetylmuramyl-Alanyl-IsoglutamineNOD2 protein, humanNod2 Signaling Adaptor ProteinTumor Necrosis Factor-alphaXIAP protein, humanX-Linked Inhibitor of Apoptosis Proteinflow cytometryIL-18iNKT cellsNOD2TNFαXIAP deficiency

Identifiers

PMID40128104
PMCPMC12062573

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.