Evidence map›Paper›PMID 40127296›Full record

ArticleJournal of the American Chemical Society2025

Top-Down Ion Mobility Mass Spectrometry Reveals a Disease Associated Conformational Ensemble of Alpha-1-antitrypsin.

Sarah Vickers, Ibrahim Aldobiyan, Sarah M Lowen, James A Irving, David A Lomas, Konstantinos Thalassinos

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. The mechanism of pathogenic αProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sarah VickersInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, U.K.ORCID 0009-0003-0157-9181
Ibrahim AldobiyanCentre for Respiratory Biology, Division of Medicine, University College London, London WC1E 6JF, U.K.
Sarah M LowenCentre for Respiratory Biology, Division of Medicine, University College London, London WC1E 6JF, U.K.
James A IrvingCentre for Respiratory Biology, Division of Medicine, University College London, London WC1E 6JF, U.K.ORCID 0000-0003-3204-6356
David A LomasCentre for Respiratory Biology, Division of Medicine, University College London, London WC1E 6JF, U.K.
Konstantinos ThalassinosInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, U.K.ORCID 0000-0001-5072-8428

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutants of members of the serpin superfamily can undergo nonamyloid aggregation to form polymeric chains that are associated with disease. This is typified by Z alpha-1-antitrypsin (Glu342Lys) that accumulates as polymers within hepatocytes to cause cirrhosis. We have used ion mobility mass spectrometry and electron-capture dissociation to directly observe and characterize novel intermediates formed during polymerization. Our data are congruent with an ensemble of conformations that are monomeric but maintained in a partially misfolded metastable state in which ∼12% of the molecule at the C-terminus is displaced. The application of these techniques to Z alpha-1-antitrypsin polymers isolated from human liver revealed a molecular species most consistent with a polymer mediated by an intermolecular C-terminal domain insertion. These findings establish a previously unobserved progression of pathogenic structural changes and thereby extend the mechanism of alpha-1-antitrypsin polymerization. They additionally demonstrate the strengths of native top-down ion mobility mass spectrometry in characterizing misfolding intermediates and proteins isolated from human tissue.

Indexed as

alpha 1-AntitrypsinHumansIon Mobility SpectrometryMass SpectrometryModels, MolecularProtein Conformationalpha 1-Antitrypsin

Identifiers

PMID40127296
PMCPMC12100655

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.