Evidence map›Paper›PMID 40127266›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Large-scale combination screens reveal small-molecule sensitization of antibiotic-resistant gram-negative ESKAPE pathogens.

Megan W Tse, Meilin Zhu, Benjamin Peters, Efrat Hamami, Julie Chen, Kathleen P Davis, Samuel Nitz, Juliane Weller, Thulasi Warrier, Diana K Hunt and 15 more

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Bacterial peptide deformylase inhibitors induce prophages in competitors.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Megan W Tse *Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0002-4968-7072
Meilin Zhu *Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.
Benjamin Peters *Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Efrat Hamami *Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.ORCID 0009-0008-1950-3587
Julie ChenDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0003-4648-7478
Kathleen P DavisDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.ORCID 0000-0002-3034-2162
Samuel NitzDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0003-3050-8000
Juliane WellerDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0002-1310-6168
Thulasi WarrierBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Diana K HuntBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Yoelkys MoralesDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.
Tomohiko KawateBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Jeffrey L GaulinBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Jon H ComeBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Juan Hernandez-BirdDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.ORCID 0000-0002-6106-2438
Wenwen HuoDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.
Isabelle NeisewanderDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.
Xiao YuBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Jose A Aceves-SalvadorDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0002-9161-5945
Laura L KiesslingDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0001-6829-1500
Deborah T HungBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Joan MecsasDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.ORCID 0000-0001-9455-6672
Bree B AldridgeDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.ORCID 0000-0003-2236-1424
Ralph R Isberg *Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111.
Paul C Blainey *Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0002-4889-8783

Funding

Innovative technologies to transform antibiotic discovery. Project 4 Infection site-specific amplification of antimicrobial conjugatesU19AI142780 · NIAID · BROAD INSTITUTE, INC. · PI HUNG, DEBORAH T · 2019 to 2023
$33.9M
Predicting the emergence of antibiotic resistance through multi-omics approaches and Immune System-surveillanU01AI124302 · NIAID · BOSTON COLLEGE · PI BENTO, JOSE, COOPER, VAUGHN · 2016 to 2020
$10.2M
Drug resistance enablers and their role in antibiotic treatment failureU19AI158076 · NIAID · BROAD INSTITUTE, INC. · PI COOPER, VAUGHN, ISBERG, RALPH R. · 2022 to 2025
$10.0M
MOLECULAR ANALYSIS OF MICROBIAL PATHOGENST32AI007422 · NIAID · TUFTS UNIVERSITY BOSTON · PI Ralph R. Isberg · 1992 to 2026
$5.7M
Tri-Institutional PhD Program in Computational Biology & MedicineT32GM132083 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Doron Betel, Iman Hajirasouliha · 2020 to 2026
$3.6M
Designing mammarenavirus live vaccines with unbreachable attenuationR21AI169789 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 2022 to 2023
$488k
Identification of the Achilles’ heel in Acinetobacter fluoroquinolone-resistant mutantsR21AI128328 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2017 to 2018
$454k
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) 1U01AI124302-01HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI169789HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21AI128328-02HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) T32AI007422HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U19AI158076HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U19AI42780NIAID NIH HHS R21 AI128328NIAID NIH HHS R21 AI169789NIAID NIH HHS T32 AI007422NIAID NIH HHS U01 AI124302NIAID NIH HHS U19 AI142780NIAID NIH HHS U19 AI158076NIGMS NIH HHS T32 GM132083
6 · The paper itself

Abstract

Antibiotic resistance, especially in multidrug-resistant ESKAPE pathogens, remains a worldwide problem. Combination antimicrobial therapies may be an important strategy to overcome resistance and broaden the spectrum of existing antibiotics. However, this strategy is limited by the ability to efficiently screen large combinatorial chemical spaces. Here, we deployed a high-throughput combinatorial screening platform, DropArray, to evaluate the interactions of over 30,000 compounds with up to 22 antibiotics and 6 strains of gram-negative ESKAPE pathogens, totaling to over 1.3 million unique strain-antibiotic-compound combinations. In this dataset, compounds more frequently exhibited synergy with known antibiotics than single-agent activity. We identified a compound, P2-56, and developed a more potent analog, P2-56-3, which potentiated rifampin (RIF) against antibiotic-resistant strains of

Indexed as

Anti-Bacterial AgentsDrug Resistance, Multiple, BacterialGram-Negative BacteriaSmall Molecule LibrariesAcinetobacter baumanniiDrug SynergismHigh-Throughput Screening AssaysKlebsiella pneumoniaeMicrobial Sensitivity TestsRifampinAnti-Bacterial AgentsRifampinSmall Molecule LibrariesAcinetobacter baumanniiantibiotic combinations discoveryantibiotic potentiatorsgram-negative ESKAPE pathogenssynergy

Identifiers

PMID40127266
PMCPMC12002207

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.