Evidence map›Paper›PMID 40126670›Full record

ArticlePlant cell reports2025

Transcriptomic analysis of regulating the growth and development of tomato seedlings by the crosstalk between JA and TOR signaling.

Hongyun Xing, Yipeng Bai, Qi Ding, Haoran Wang, Guorui Gao, Ziqiang Hu, Yang Yu, Haiyan Fan, Xiangnan Meng, Na Cui

Abstract read
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In one paragraph

Article in Plant cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hongyun XingCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Yipeng BaiCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Qi DingCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Haoran WangSchool of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, 510006, Guangdong, China.
Guorui GaoCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Ziqiang HuCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Yang YuCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Haiyan FanCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China.
Xiangnan MengCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China. mengxn@syau.edu.cn.
Na CuiCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, China. cuina@syau.edu.cn.ORCID http://orcid.org/0000-0002-6216-1833

Funding

the Key Project of Science and Technology Research of Liaoning Provincial Education Department LJKZ0631the National Key Research and Development Program Projects of China 2019YFD1000300
6 · The paper itself

Abstract

key messageTranscription factors MYB, WRKY, bHLH, bZIP and NAC were identified as key candidate genes for JA and TOR regulation of tomato seedling growth and development. Jasmonic acid (JA) and Target of Rapamycin (TOR) signaling pathways interact to regulate plant growth, development, and stress responses. In this study, transcriptomic and weighted gene co-expression network analysis (WGCNA) were conducted on tomato wild-type (WT) and spr2 mutant lines treated with the TOR inhibitor RAP and activator MHY1485. We identified key roles of MAPK kinase and ethylene signaling in mediating JA-TOR interaction. Core transcription factors, including MYB, WRKY, bHLH, bZIP, and NAC, were highlighted as central regulators within the interaction between JA and TOR signaling network. These findings advance our understanding of how JA and TOR signaling coordinate plant growth and stress adaptation.

Indexed as

CyclopentanesOxylipinsSeedlingsSolanum lycopersicumEthylenesGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksPlant Growth RegulatorsPlant ProteinsSignal TransductionTranscription FactorsTranscriptomeCyclopentanesethyleneEthylenesjasmonic acidOxylipinsPlant Growth RegulatorsPlant ProteinsTranscription FactorsGrowth and developmentJA signalingTomatoTOR signalingTranscriptomeWGCNA

Identifiers

PMID40126670

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.