Evidence map›Paper›PMID 40126363›Full record

ArticleDisease models & mechanisms2025

Deletion of sf3b4 causes splicing defects and gene dysregulation that disrupt craniofacial development and survival.

Casey Griffin, Kelsey Coppenrath, Doha Khan, Ziyan Lin, Marko Horb, Jean-Pierre Saint-Jeannet

Abstract read
In one paragraph

Article in Disease models & mechanisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Casey GriffinDepartment of Molecular Pathobiology, College of Dentistry, New York University, New York, NY 10010, USA.ORCID 0000-0002-8754-0370
Kelsey CoppenrathEugene Bell Center for Regenerative Biology and Tissue Engineering and National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Doha KhanDepartment of Molecular Pathobiology, College of Dentistry, New York University, New York, NY 10010, USA.
Ziyan LinApplied Bioinformatics Laboratory, NYU Grossman School of Medicine, New York, NY 10010, USA.
Marko HorbEugene Bell Center for Regenerative Biology and Tissue Engineering and National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, USA.ORCID 0000-0002-5067-0518
Jean-Pierre Saint-JeannetDepartment of Molecular Pathobiology, College of Dentistry, New York University, New York, NY 10010, USA.ORCID 0000-0003-3259-2103

Funding

Resource CoreP40OD010997 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2012 to 2026
$13.1M
Xenopus Mutant ResourceR24OD030008 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2020 to 2026
$6.0M
Pathogenesis of craniofacial defects in Nager syndromeR01DE025468 · NIDCR · NEW YORK UNIVERSITY · PI SAINT-JEANNET, JEAN-PIERRE · 2016 to 2020
$2.0M
Deciphering the underlying mechanisms of craniofacial spliceosomopathiesK99DE034476 · NIDCR · NEW YORK UNIVERSITY · PI GRIFFIN, CASEY · 2024 to 2025
$251k
Function of SF3B4 in neural crest developmentF32DE030699 · NIDCR · NEW YORK UNIVERSITY · PI GRIFFIN, CASEY · 2021 to 2023
$212k
National Institutes of Health office of the Director R24-OD030008New York UniversityNIDCR NIH HHS F32 DE030699NIDCR NIH HHS K99 DE034476NIDCR NIH HHS R01 DE025468NIDCR NIH HHS R01-DE025468NIH HHS P40 OD010997NIH HHS R24 OD030008
6 · The paper itself

Abstract

Nager and Rodriguez syndromes are rare craniofacial and limb disorders characterized by midface retrusion, micrognathia, absent thumbs and radial hypoplasia. These disorders result from haploinsufficiency of SF3B4 (splicing factor 3b, subunit 4), a component of the pre-mRNA spliceosomal machinery. Although the spliceosome is present and functions in all cells of the body, most spliceosomopathies - including Nager and Rodriguez syndromes - are cell- or tissue-specific in their pathology. To understand the pathomechanism underlying these conditions, we generated a Xenopus tropicalis sf3b4 mutant line using CRISPR/Cas9 gene-editing technology. Homozygous deletion of sf3b4 is detrimental to the development of cranial neural crest (NC)-derived cartilage progenitors. Temporal RNA-sequencing analyses of mutant embryos identified an increase in exon-skipping events, followed by important transcriptional changes associated with an enrichment for terms consistent with defects in NC cell migration and survival. We propose that disruption of these processes may underly the pathogenesis of Nager and Rodriguez syndromes.

Indexed as

Craniofacial AbnormalitiesGene DeletionRNA SplicingRNA Splicing FactorsSkullXenopus ProteinsAnimalsCartilageCell MovementCell SurvivalCRISPR-Cas SystemsEmbryo, NonmammalianExonsGene Expression Regulation, DevelopmentalMandibulofacial DysostosisNeural CrestRNA Splicing FactorsXenopus ProteinsNager syndromeNeural crestSF3B4SplicingXenopus tropicalis

Identifiers

PMID40126363
PMCPMC11980789

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.