Evidence map›Paper›PMID 40124895›Full record

ArticleFrontiers in microbiology2025

Unraveling the pathogenomics of

Prasanna S Koti, T S S K Patro, K B Palanna, B Jeevan, Porapu Prasanth, G V Ramesh, N Anuradha, Y Sandhya Rani, Ungata Triveni, K Lavanya Devi and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Prasanna S KotiDepartment of Plant Biotechnology, University of Agricultural Sciences, GKVK, Bengaluru, India.
T S S K PatroAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
K B PalannaICAR-AICRP on Small Millets, Project Coordinating (PC) Unit, University of Agricultural Sciences, GKVK, Bengaluru, India.
B JeevanCrop Protection Division, ICAR-National Rice Research Institute, Cuttack, India.
Porapu PrasanthAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
G V RameshKrishi Vigyan Kendra (KVK), Nadia II, Eastern Regional Station, ICAR-National Dairy Research Institute (NDRI), Kalyani, India.
N AnuradhaAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
Y Sandhya RaniAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
Ungata TriveniAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
K Lavanya DeviFunctional Genomics and Bioinformatics Theme Group, The University of Trans-Disciplinary Health Sciences and Technology, Bengaluru, India.
T Tharana PoonachaDepartment of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, India.
Farooq KhanDepartment of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, India.
Boda PraveenAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
M DivyaAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
D Sabina MaryAgricultural Research Station, Acharya N. G. Ranga Agricultural University, Vizianagaram, India.
V Prasanna KumariDepartment of Plant Pathology, Agricultural College, Acharya N. G. Ranga Agricultural University, Bapatla, India.
T E NagarajaICAR-AICRP on Small Millets, Project Coordinating (PC) Unit, University of Agricultural Sciences, GKVK, Bengaluru, India.
R MadhusudhanaICAR-Indian Institute of Millets Research, Hyderabad, India.
C Tara SatyavathiICAR-Indian Institute of Millets Research, Hyderabad, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Banded sheath blight (Bsb), caused by Methods: Results: The VAP-1 genome assembly resulted in a total size of 47.12 Mb, with approximately 17.62% of the genome consisting of repetitive sequences, predominantly dominated by interspersed elements (around 97.8%). These interspersed elements were primarily classified as retrotransposons (72%), with DNA transposons comprising a smaller proportion (5%), while the remaining interspersed sequences were not fully annotated. Functional analysis of the genome revealed significant enrichment in KEGG pathways, including "Carbohydrate metabolism," "Translation," "Signal transduction," and "Transport and catabolism." In addition, Gene Ontology (GO) terms such as "Proteolysis," "Membrane," and "ATP binding" were notably enriched. The secretory protein profile of the VAP-1 genome from Discussion: Functional analysis of the VAP-1 genome has unveiled a wealth of insights, though we have only begun to scratch the surface. KEGG and GO annotations point to critical proteins that are essential for host infection, providing the pathogen with a potent arsenal for successful penetration, survival, and dissemination within the host. The secretory proteins encoded in the VAP-1 genome play a pivotal role in equipping the pathogen with the necessary tools to degrade plant cell wall polymers, release cell wall-bound saccharides, and break down polysaccharides for energy utilization and host colonization. Notable variations were observed in several secretome superfamily proteins within the VAP-1 strain. These findings underscore the genomic diversity present within

Indexed as

CAZymesgenetic diversityproso milletretrotransposonsRhizoctonia solanisecretome

Identifiers

PMID40124895
PMCPMC11925929

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.