Evidence map›Paper›PMID 40124490›Full record

ArticleiScience2025

Unsupervised spatiotemporal classification of deformation patterns of embryonic tissues matches their fate map.

David Pastor-Escuredo, Benoît Lombardot, Thierry Savy, Adeline Boyreau, René Doursat, Jose M Goicolea, Andrés Santos, Paul Bourgine, Juan C Del Álamo, María J Ledesma-Carbayo and 1 more

Abstract read
In one paragraph

Article in iScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Dynamical systems of fate and form in development.Seminars in cell & developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

David Pastor-EscuredoUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.
Benoît LombardotUPS3611 Complex Systems Institute Paris Ile-de-France (ISC-PIF), CNRS, Paris, France.
Thierry SavyUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.
Adeline BoyreauUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.
René DoursatUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.
Jose M GoicoleaComputational Mechanics Group, Universidad Politécnica de Madrid, 28040 Madrid, Spain.
Andrés SantosBiomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, 28040 Madrid, Spain.
Paul BourgineUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.
Juan C Del ÁlamoMechanical and Aerospace Engineering Department, University of California San Diego, La Jolla, CA 92093, USA.
María J Ledesma-CarbayoBiomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, 28040 Madrid, Spain.
Nadine PeyriérasUSR3695/FRE2039 BioEmergences, CNRS, Paris-Saclay University, Gif-sur-Yvette, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During morphogenesis, embryonic tissues display fluid-like behavior with fluctuating strain rates. Digital cell lineages reconstructed from 4D images of developing zebrafish embryos are used to infer representative tissue deformation patterns and their association with developmental events. Finite deformation analysis along cell trajectories and unsupervised machine learning are applied to obtain reduced-order models condensing the collective cell motions, delineating tissue domains with distinct 4D biomechanical behavior. This reduced-order kinematic description is reproducible across specimens and matches fate maps of the zebrafish brain in wild-type and nodal pathway mutants (

Indexed as

Biological sciencesCell biologyDevelopmental biology

Identifiers

PMID40124490
PMCPMC11926744

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.