Evidence map›Paper›PMID 40124365›Full record

ArticleFrontiers in immunology2025

Intersecting SARS-CoV-2 spike mutations and global vaccine efficacy against COVID-19.

Samaneh Tokhanbigli, Samira Salami Ghaleh, Karim Rahimian, Mohammadamin Mahmanzar, Saleha Bayat, Shahrzad Ahangarzadeh, Bahman Moradi, Reza Mahmanzar, Yunliang Wang, Brian Gregory George Oliver and 1 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Samaneh Tokhanbigli *School of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Samira Salami Ghaleh *Department of Computer Science, University of Tabriz, Tabriz, Iran.
Karim Rahimian *Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran.
Mohammadamin MahmanzarInstitute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran.
Saleha BayatDepartment of Biology and Research Center for Animal Development Applied Biology, Mashhad Branch, Islamic Azad University, Mashhad, Iran.
Shahrzad AhangarzadehInfectious Diseases and Tropical Medicine Research Center, Isfahan University of Medical Sciences, Isfahan, Iran.
Bahman MoradiDepartment of Biology, Faculty of Sciences, Shahid Bahonar University of Kerman, Kerman, Iran.
Reza MahmanzarDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Yunliang WangDepartment of Neurology, The Second Affiliated Hospital, Zhengzhou University, Zhengzhou, Henan, China.
Brian Gregory George OliverSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Youping DengDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, United States.

Funding

UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Peter R Hoffmann · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Benjamin C. Fogelgren · 2017 to 2026
$59.5M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Pallav Pokhrel · 1996 to 2026
$56.2M
University of Guam/Cancer Research Center of Hawaii Partnership (1 of 2)U54CA143727 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Brenda Yukari Hernandez, RACHAEL T LEON GUERRERO · 2009 to 2026
$19.1M
Tracking and Evaluation CoreU54GM138062 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI SY, ANGELA U · 2021 to 2025
$15.5M
Selenium Metabolism in the Heart: Impact of High Fructose and Low SeleniumP20GM139753 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Marla J Berry · 2022 to 2026
$13.3M
Pacific Center for Genome ResearchU54HG013243 · NHGRI · UNIVERSITY OF HAWAII AT MANOA · PI Alexandra Margaret Lynn Binder, Youping Deng · 2023 to 2026
$10.8M
Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI NERURKAR, VIVEK RAMCHANDRA · 2015 to 2022
$8.1M
The Hawaii Advanced Training in Artificial Intelligence for Precision Nutrition Science Research (AIPrN)T32DK137523 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI Youping Deng, RACHEL NOVOTNY · 2023 to 2026
$1.7M
NCI NIH HHS P30 CA071789NCI NIH HHS U54 CA143727NHGRI NIH HHS U54 HG013243NIDDK NIH HHS T32 DK137523NIGMS NIH HHS P20 GM103466NIGMS NIH HHS P20 GM139753NIGMS NIH HHS P30 GM114737NIGMS NIH HHS U54 GM138062NIMHD NIH HHS U54 MD007601
6 · The paper itself

Abstract

In line with encountering the world with the emergence of vaccine-resistance variants of SARS-CoV-2, 15,669,529 samples that received COVID-19 vaccines until April 2023 were investigated as two doses in the first phase and booster vaccinations in the second phase. The analysis shows that D614G and P681 mutations occurred in both phases. The E484 and Y655 mutations significantly emerged during the second phase. The 762-889 and 254-381 regions are revealed as conserved parts and could be considered in vaccine design. The Kruskal-Wallis test revealed a significant reduction in single mutations between populations with 20%-50% and those with 70%-100% vaccination coverage (p=0.017). The Mann-Whitney U test proposes a link between vaccination and suppression of viral mutation rates. Dynamic modeling suggests that key mutations have facilitated the virus' evolution and immune escape. The study's findings are crucial for understanding virus genome mutations, especially E614 and P681 in Delta and E484 and H655 in Omicron. This highlights the need to adjust strategies and strengthen global efforts in combating the pandemic.

Indexed as

COVID-19COVID-19 VaccinesMutationSARS-CoV-2Spike Glycoprotein, CoronavirusVaccine EfficacyHumansCOVID-19 VaccinesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2D614GE484mutationP681SARS-CoV-2spikevaccinationY655

Identifiers

PMID40124365
PMCPMC11925781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.