Evidence map›Paper›PMID 40121605›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2025

Regreening mechanisms in cucumber: insights from a CsSIG2 mutation affecting chloroplast development.

Hanqiang Liu, Zeqiang Huang, Xinyue Wang, Kaihong Hu, Qinqin Jiang, Feifan Chen, Yuxuan Ma, Zhihui Cheng, Yupeng Pan, Yiqun Weng

Abstract read
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hanqiang Liu *College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.ORCID http://orcid.org/0000-0001-9506-7272
Zeqiang Huang *College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xinyue Wang *College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Kaihong HuDepartment of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, 163319, Heilongjiang, China.
Qinqin JiangCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Feifan ChenDepartment of Plant and Agroecosystem Sciences, University of Wisconsin, Madison, WI, 53706, USA.
Yuxuan MaCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Zhihui ChengCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yupeng PanCollege of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China. yupeng.pan@nwafu.edu.cn.ORCID http://orcid.org/0000-0001-6682-924X
Yiqun WengDepartment of Plant and Agroecosystem Sciences, University of Wisconsin, Madison, WI, 53706, USA. yiqun.weng@usda.gov.ORCID http://orcid.org/0000-0001-9457-2234

Funding

The Chinese Universities Scientific Fund 2452022004The National Key Research and Development Program of China 2023YFE0206900The National Natural Science Foundation of China 32202493U.S. Department of Agriculture (USDA) - National Institute of Food and Agriculture 2020-51181-32139U.S. Department of Agriculture (USDA) - National Institute of Food and Agriculture 2021-67013-33840
6 · The paper itself

Abstract

key messageCsSIG2 is essential for cucumber chloroplast development, and mutations in CsSIG2 reveal mechanisms that restore chloroplast functionality and drive the regreening phenotype in the mutant. Chloroplast development and leaf color are essential traits that significantly influence plant photosynthesis and overall vigor. This study investigates a natural mutation in the cucumber that leads to a virescent leaf-color (Csvl-6) phenotype characterized by an initial yellow color in cotyledons and young leaves, which gradually transition to green as the plant matures. We utilized bulked segregant analysis and genetic linkage mapping to locate the best candidate gene sigma factor 2 (CsSIG2) on chromosome 6, identifying a single nonsynonymous SNP resulting in an arginine to glycine substitution in the CsSIG2 protein. Comparative transcriptome analysis highlighted that this mutation disrupts early chloroplast biogenesis and delays chlorophyll accumulation, but the chloroplasts can recover, leading to greening during later stages of leaf development. Our findings reveal that the recovery phenomenon involves upregulation of chloroplast-encoded genes responsible for thylakoid membrane formation and photosystem function, alongside altered expression of transcription factors linked to chlorophyll metabolism. This study elucidates the genetic and molecular basis of chloroplast development in cucumber, providing valuable insights into the mechanisms underlying leaf greening, which could inform future breeding efforts focused on manipulating leaf color traits for enhanced crop performance.

Indexed as

ChloroplastsCucumis sativusMutationPlant ProteinsSigma FactorChlorophyllChromosome MappingGene Expression Regulation, PlantGenetic LinkagePhenotypePhotosynthesisPlant LeavesPolymorphism, Single NucleotideChlorophyllPlant ProteinsSigma Factor

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.