Evidence map›Paper›PMID 40121243›Full record

ArticleScientific reports2025

Metatranscriptomic analysis reveals gut microbiome bacterial genes in pyruvate and amino acid metabolism associated with hyperuricemia and gout in humans.

Gabriela Angélica Martínez-Nava, Efren Altamirano-Molina, Janitzia Vázquez-Mellado, Carlos S Casimiro-Soriguer, Joaquín Dopazo, Carlos Lozada-Pérez, Brígida Herrera-López, Laura Edith Martínez-Gómez, Carlos Martínez-Armenta, Dafne Lissete Guido-Gómora and 17 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Gabriela Angélica Martínez-NavaLaboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Efren Altamirano-MolinaEscuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, Col. Casco de Santo Tomas, Alcaldía Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Janitzia Vázquez-MelladoServicio de Reumatología, Hospital General de México Eduardo Liceaga, Dr. Balmis 148, Doctores, Cuauhtémoc, C.P. 06720, CDMX, Mexico.
Carlos S Casimiro-SoriguerPlataforma de Medicina Computacional, Fundación Progreso y Salud (FPS), CDCA, Hospital Vírgen del Rocio, 41013, Sevilla, España.
Joaquín DopazoPlataforma de Medicina Computacional, Fundación Progreso y Salud (FPS), CDCA, Hospital Vírgen del Rocio, 41013, Sevilla, España.
Carlos Lozada-PérezServicio de Reumatología, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, C.P. 4389, CDMX, Mexico.
Brígida Herrera-LópezLaboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Laura Edith Martínez-GómezLaboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Carlos Martínez-ArmentaLaboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Dafne Lissete Guido-GómoraServicio de reconstrucción articular de cadera y rodilla, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, CDMX, C.P. 14389, Mexico.
Sarahí Valle-GutiérrezUniversidad Autónoma Metropolitana Iztapalapa, Av. Ferrocarril San Rafael Atlixco, Núm. 186, Col. Leyes de Reforma 1 A Sección, Alcaldía Iztapalapa, Tlalpan, C.P. 09310, CDMX, Mexico.
Carlos Suarez-AhedoServicio de reconstrucción articular de cadera y rodilla, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, CDMX, C.P. 14389, Mexico.
María Del Carmen Camacho-ReaDepartamento de Nutrición Animal, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, CDMX, Mexico.
Mireya Martínez-GarcíaDepartamento de Inmunología, Instituto Nacional de Cardiología Ignacio Chávez, Juan Badiano 1, Belisario Domínguez Secc 16, Tlalpan, 14080, CDMX, Mexico.
Guadalupe Gutiérrez-EsparzaPrograma Investigador para México de la SECIHTI, Secretaría de Ciencias, Humanidades, Tecnología e Innovación, Ciudad de México, Avenida Insurgentes Sur 1582, Crédito Constructor, CDMX, Mexico.
Luis M Amezcua-GuerraDepartamento de Inmunología, Instituto Nacional de Cardiología Ignacio Chávez, Juan Badiano 1, Belisario Domínguez Secc 16, Tlalpan, 14080, CDMX, Mexico.
Yessica Zamudio-CuevasLaboratorio de Líquido Sinovial, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Karina Martínez-FloresLaboratorio de Líquido Sinovial, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Javier Fernández-TorresLaboratorio de Líquido Sinovial, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Ana I Burguete-GarcíaGID Microbiota y Epidemiologia Genética, Instituto Nacional de Salud Pública, Universidad No. 655 Colonia Santa María Ahuacatitlán, Cuernavaca, Morelos, Mexico.
Yaneth Citlalli Orbe-OrihuelaGID Microbiota y Epidemiologia Genética, Instituto Nacional de Salud Pública, Universidad No. 655 Colonia Santa María Ahuacatitlán, Cuernavaca, Morelos, Mexico.
Alfredo Lagunas-MartínezGID Microbiota y Epidemiologia Genética, Instituto Nacional de Salud Pública, Universidad No. 655 Colonia Santa María Ahuacatitlán, Cuernavaca, Morelos, Mexico.
Eder Orlando Méndez-SalazarUniversity of Montreal Research Center (CR-CHUM), Montréal, Québec, Canada.
Adriana Francisco-BalderasHospital General de Zona No. 71 "Benito Coquet Lagunes", Instituto Mexicano de la Seguridad Social, Av. Salvador Díaz Mirón s/n, Pastora, Floresta, C.P. 91930, Veracruz, Mexico.
Berenice Palacios-GonzálezLaboratorio de Envejecimiento Saludable del INMEGEN en el Centro de Investigación sobre el Envejecimiento, Calz. de los Tenorios 235. Col. Rinconada de las Hadas, Tlalpan, 14330, CDMX, Mexico.
Carlos PinedaDirección General, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico.
Alberto López-ReyesLaboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Calz México-Xochimilco 289, Coapa, Col. Arenal de Guadalupe, Tlalpan, 14389, CDMX, Mexico. allorey@yahoo.com.ORCID https://orcid.org/0000-0002-2575-2589

Funding

Consejo Nacional de Humanidades, Ciencias y Tecnologías (CONAHCyT) FORDECYT-PRONACES/87754/2020
6 · The paper itself

Abstract

Several pathologies with metabolic origin, such as hyperuricemia and gout, have been associated with the gut microbiota taxonomic profile. However, there is no evidence of which bacterial genes are being expressed in the gut microbiome, and of their potential effects on hyperuricemia and gout. We sequenced the RNA of 26 fecal samples from 10 healthy normouricemic controls, 10 with asymptomatic hyperuricemia (AH), and six gout patients. The coding sequences were mapped to KEGG orthologues (KO). We compared the expression levels using generalized linear models and validated the expression of four KO in a larger sample by qRT-PCR. A distinct genetic expression pattern was identified among groups. AH individuals and gout patients showed an over-expression of KOs mainly related to pyruvate metabolism (Log2foldchange > 23, p-adj ≤ 3.56 × 10

Indexed as

Amino AcidsBacteriaGastrointestinal MicrobiomeGenes, BacterialGoutHyperuricemiaPyruvic AcidTranscriptomeAdultAgedCase-Control StudiesFecesFemaleGene Expression ProfilingHumansMaleAmino AcidsPyruvic AcidGoutGut MicrobiomeHyperuricemiaMeta-transcriptome

Identifiers

PMID40121243
PMCPMC11929762

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.