Evidence map›Paper›PMID 40121088›Full record

ArticleMethods in enzymology2025

Determining the biochemical function of type IV CRISPR ribonucleoprotein complexes and accessory proteins.

Andrew A Williams, Olivine Redman, Hannah Domgaard, Matthew J Armbrust, Ryan N Jackson

Abstract read
In one paragraph

Article in Methods in enzymology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew A WilliamsDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT, United States.
Olivine RedmanDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT, United States.
Hannah DomgaardDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT, United States.
Matthew J ArmbrustDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT, United States.
Ryan N JacksonDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT, United States. Electronic address: ryan.jackson@usu.edu.

Funding

Determining the Structure and Function of Newly Discovered Immune SystemsR35GM138080 · NIGMS · UTAH STATE UNIVERSITY · PI Ryan Neal Jackson · 2020 to 2026
$2.8M
NIGMS NIH HHS R35 GM138080
6 · The paper itself

Abstract

Type IV CRISPR systems are phylogenetically diverse and poorly understood. However, recently, major strides have been made toward understanding type IV-A systems. In type IV-A systems, a multi-subunit ribonucleoprotein complex, called the Csf complex, uses a CRISPR-derived guide to bind double-stranded DNA, forming an R-loop to which a helicase called CRISPR-associated DinG (CasDinG) is recruited. It is proposed that the ATP-dependent helicase activity of CasDinG then unwinds duplex DNA near the targeting site, impairing RNA transcription, and gene expression. Here we describe methods used to investigate the type IV-A system from Pseudomonas aeruginosa strain 83 including a plasmid clearance assay, expression and purification of type IV ribonucleoprotein complexes and proteins, nucleic acid binding assays, and CasDinG helicase assays. These methods provide a foundation for future work aimed at understanding these enigmatic systems.

Indexed as

Bacterial ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCRISPR-Cas SystemsPseudomonas aeruginosaRibonucleoproteinsDNA HelicasesPlasmidsRNA, Guide, CRISPR-Cas SystemsBacterial ProteinsCRISPR-Associated ProteinsDNA HelicasesRibonucleoproteinsRNA, Guide, CRISPR-Cas SystemsFluorescence anisotropyHelicase assayPlasmid clearance assayProtein purificationType IV CRISPR

Identifiers

PMID40121088
PMCPMC12931960

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.