Evidence map›Paper›PMID 40120127›Full record

ArticleMolecular biology and evolution2025

On the Probability of Reaching High Peaks in Fitness Landscapes by Adaptive Walks.

Yang Li, Jianzhi Zhang

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Article in Molecular biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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6citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Inference and visualization of complex genotype-phenotype maps withbioRxiv : the preprint server for biology · 2025
    Article
4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Yang LiDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0003-2530-7167
Jianzhi ZhangDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0001-6141-1290

Funding

Genomic and Systemic Approaches to Evolutionary MechanismsR35GM139484 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JIANZHI ZHANG · 2021 to 2026
$3.2M
High-Performance Computing Cluster for Biomedical ResearchS10OD026825 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID · 2020 to 2020
$600k
NIGMS NIH HHS R35 GM139484NIH HHS S10 OD026825US National Institutes of Health R35GM139484
6 · The paper itself

Abstract

Adaptive evolution can be described by an uphill walk in a fitness landscape. However, climbing the global peak in a multipeak landscape is improbable because of the high chance of being trapped at a local peak. Nonetheless, over three-quarters of simulated adaptive walks in the fitness landscape of the Escherichia coli dihydrofolate reductase (DHFR) gene were reported to end at the highest 14% of peaks, suggesting that biological systems may be substantially more evolvable than commonly thought. To investigate the cause and generality of this observation, we estimate in empirical and theoretical fitness landscapes the probability of reaching high peaks by adaptive walks (PHP), where high peaks refer to the highest 1, 5, 14, or 25% of all peaks. We find that (i) PHP varies substantially among landscapes, (ii) PHP in empirical landscapes is generally comparable to or smaller than that in same-size Rough Mount Fuji landscapes of similar ruggedness, and (iii) lowering landscape ruggedness boosts PHP. As observed in DHFR, we find in every examined landscape a positive correlation between the fitness of a peak and its basin size, which is the number of genotypes that can reach the peak through adaptive walks. Yet, this correlation does not guarantee a large PHP because of the influences of other factors. We conclude that evolvability depends on the specific fitness landscape and that the large PHP in the DHFR landscape is not a general property of empirical or theoretical fitness landscapes.

Indexed as

Escherichia coliEvolution, MolecularGenetic FitnessModels, GeneticTetrahydrofolate DehydrogenaseProbabilityTetrahydrofolate Dehydrogenaseadaptive walkfitness landscapelandscape ruggednesspeak accessibilityRough Mount Fuji model

Identifiers

PMID40120127
PMCPMC11975533

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.