Evidence map›Paper›PMID 40119885›Full record

ArticleArchives of microbiology2025

GepA, a GGDEF-EAL protein, regulates biofilm formation and swimming motility in Vibrio parahaemolyticus.

Miaomiao Zhang, Yurui Zhu, Xue Li, Xi Luo, Hui Sun, Shuhui Xiong, Renfei Lu, Yiquan Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. AphA-dependent c-di-GMP production inJournal of bacteriology · 2025
    Article
  4. CalR is an activator of biofilm formation inApplied and environmental microbiology · 2025
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Miaomiao Zhang *Department of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China.
Yurui Zhu *School of Medicine, Nantong University, Nantong, 226001, Jiangsu, China.
Xue LiDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China.
Xi LuoDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China.
Hui SunDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China.
Shuhui XiongDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China.
Renfei LuDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China. rainman78@163.com.
Yiquan ZhangDepartment of Clinical Laboratory, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226006, Jiangsu, China. zhangyiquanq@163.com.

Funding

Natural Science Foundation of Nantong University JC2023045Research Project of Nantong Health Commission QN2022044
6 · The paper itself

Abstract

Cyclic diguanylate monophosphate (c-di-GMP) is a second messenger that regulates multiple bacterial behaviors. It is synthesized by diguanylate cyclase (DGC) with the GGDEF domain, and degraded by phosphodiesterase (PDE) with the EAL or HD-GYP domain. The GepA (VP0117) protein in Vibrio parahaemolyticus contains both GGDEF and EAL domains, but its role remains unknown. This study found that deletion of the EAL domain or both the GGDEF and EAL domains in GepA increased intracellular c-di-GMP levels, enhanced biofilm formation, and inhibited polar flagellum-mediated swimming motility. Deletion of only the GGDEF domain had no such effects. Additionally, removing the EAL domain or both the GGDEF and EAL domains increased cpsA expression and decreased polar flagellar gene expression, while deleting the GGDEF domain alone had no impact on these genes. Overexpression of GepA or a GepA variant with a mutated GGDEF domain reduced biofilm formation but increased swimming motility. However, overexpression of GepA with a mutated EAL domain did not produce the expected phenotypic changes. In summary, GepA functions as a PDE to degrade c-di-GMP, thereby suppressing biofilm formation and enhancing swimming motility in V. parahaemolyticus.

Indexed as

Bacterial ProteinsBiofilmsVibrio parahaemolyticusCyclic GMPFlagellaGene Expression Regulation, BacterialPhosphoric Diester HydrolasesProtein DomainsBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPPhosphoric Diester HydrolasesBiofilm formationc-di-GMPGepASwimmingVibrio parahaemolyticus

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.