Evidence map›Paper›PMID 40119742›Full record

ArticleGenetics2025

Two eIF4E paralogs occupy separate germ granule messenger ribonucleoproteins that mediate mRNA repression and translational activation.

Gita Gajjar, Hayden P Huggins, Eun Suk Kim, Weihua Huang, Frederic X Bonnet, Dustin L Updike, Brett D Keiper

Abstract read
In one paragraph

Article in Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. SLBP-independent control of maternal histone mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. eIF4E assembly intobioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gita GajjarDepartment of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, East Carolina University, Greenville, NC 27834, USA.
Hayden P HugginsDepartment of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, East Carolina University, Greenville, NC 27834, USA.
Eun Suk KimDepartment of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, East Carolina University, Greenville, NC 27834, USA.
Weihua HuangDepartment of Pathology and Laboratory Medicine, Brody School of Medicine at East Carolina University, East Carolina University, Greenville, NC 27834, USA.
Frederic X BonnetKatherine W. Davis Center for Regenerative Biology and Aging, Mount Desert Island Biological Laboratory, Bar Harbor, ME 04609, USA.ORCID 0000-0001-9334-8142
Dustin L UpdikeKatherine W. Davis Center for Regenerative Biology and Aging, Mount Desert Island Biological Laboratory, Bar Harbor, ME 04609, USA.ORCID 0000-0002-1745-3669
Brett D KeiperDepartment of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, East Carolina University, Greenville, NC 27834, USA.ORCID 0000-0002-8621-9825

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI JAMES A COFFMAN · 2012 to 2026
$60.0M
Understanding the role of thyroid hormone signaling during axolotl limb regenerationP20GM104318 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI DRUMMOND, IAIN A. · 2013 to 2023
$23.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
The MDIBL Center for Comparative Biology of Tissue Repair, Regeneration and AgingP30GM154610 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI IAIN A. DRUMMOND · 2024 to 2026
$5.0M
The function of germ granule processes that maintain pluripotency in the C. elegans germlineR35GM152109 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Dustin Lynn Updike · 2024 to 2026
$1.2M
Institutional Development AwardMDI Biological Laboratory LMFNIGMS NIH HHS P20 GM103423NIGMS NIH HHS P20 GM104318NIGMS NIH HHS P30 GM154610NIGMS NIH HHS R35 GM152109NIH HHS P40 OD010440NIH HHS R35GM152109NSF MCB 213973Salisbury Cove Research Fund
6 · The paper itself

Abstract

We studied translation factor eukaryotic initiation factor 4E (eIF4E) paralogs that regulate germline mRNAs. Translational control of mRNAs is essential for germ cell differentiation and embryogenesis. Messenger ribonucleoprotein complexes assemble on mRNAs in the nucleus, as they exit via perinuclear germ granules, and in the cytoplasm. Bound messenger ribonucleoproteins including eIF4E exert both positive and negative posttranscriptional regulation. In Caenorhabditiselegans, germ granules are surprisingly dynamic messenger ribonucleoprotein condensates that remodel during development. Two eIF4E paralogs (IFE-1 and IFE-3), their cognate eIF4E-interacting proteins, and polyadenylated mRNAs are present in germ granules. Affinity purification of IFE-1 and IFE-3 messenger ribonucleoproteins allowed mass spectrometry and mRNA-Seq to identify other proteins and the mRNAs that populate stable eukaryotic initiation factor 4E complexes. We find translationally repressed mRNAs (e.g. pos-1, mex-3, spn-4, etc.) enriched with IFE-3, but excluded from IFE-1. Identified mRNAs overlap substantially with mRNAs previously described to be IFE-1 dependent for translation. The findings suggest that oocytes and embryos utilize the 2 eukaryotic initiation factor 4E paralogs for opposite purposes on critically regulated germline mRNAs. Sublocalization within adult perinuclear germ granules suggests an architecture in which Vasa/GLH-1, PGL-1, and the IFEs are stratified, which may facilitate sequential remodeling of messenger ribonucleoproteins leaving the nucleus. Biochemical composition of isolated messenger ribonucleoproteins indicates opposing yet cooperative roles for the 2 eukaryotic initiation factor 4E paralogs. We propose that the IFEs accompany controlled mRNAs in the repressed or activated state during transit to the cytoplasm. Copurification of IFE-1 with IFE-3 suggests they may interact to move repressed mRNAs to ribosomes.

Indexed as

Eukaryotic Initiation Factor-4EGerm CellsProtein BiosynthesisRibonucleoproteinsRNA, MessengerAnimalsCytoplasmic GranulesEukaryotic Initiation Factor-4Emessenger ribonucleoproteinRibonucleoproteinsRNA, Messenger4E-interacting proteins (4EIPs)cap-binding proteinsembryogenesisgerm cell condensatesmRNA translational controlmRNP remodelingoogenesisVasaWormBase

Identifiers

PMID40119742
PMCPMC12059638

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.