Evidence map›Paper›PMID 40117306›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Structural elucidation of how ARF small GTPases induce membrane tubulation for vesicle fission.

Xiaoyun Pang, Yan Zhang, Kunyou Park, Zhenyu Liao, Jian Li, Jiashu Xu, Minh-Triet Hong, Guoliang Yin, Tongming Zhang, Yaoyu Wang and 5 more

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Phosphatidylinositol 4,5-bisphosphate mediates Arl4D self-interaction to promote Pak1 signaling.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Frontiers in cell and developmental biology · 2026
    Review
  8. A structure-based mechanism for initiation of AP-3 coated vesicle formation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Xiaoyun Pang *Key Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-8476-3771
Yan Zhang *Key Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0001-5575-6882
Kunyou Park *Department of Life Sciences, Pohang University of Science and Technology, Pohang, Gyeongbuk 37673, Republic of Korea.
Zhenyu LiaoDepartment of Materials Science and Engineering, and Center for Advanced Nuclear Safety and Sustainable Development, City University of Hong Kong, Kowloon, Hong Kong 999077, China.ORCID 0000-0001-9500-3420
Jian LiDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, and Department of Medicine, Harvard Medical School, Boston, MA 02115.
Jiashu XuKey Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Minh-Triet HongDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Gyeongbuk 37673, Republic of Korea.
Guoliang YinKey Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Tongming ZhangKey Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Yaoyu WangKey Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.ORCID 0000-0003-4844-5212
Jun FanDepartment of Materials Science and Engineering, and Center for Advanced Nuclear Safety and Sustainable Development, City University of Hong Kong, Kowloon, Hong Kong 999077, China.ORCID 0000-0001-8227-9671
Victor W HsuDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, and Department of Medicine, Harvard Medical School, Boston, MA 02115.ORCID 0000-0002-6763-4636
Seung-Yeol ParkDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Gyeongbuk 37673, Republic of Korea.ORCID 0000-0001-5061-4535
Fei SunKey Laboratory of Biomacromolecules (Chinese Academy of Sciences), National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-0351-5144

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Mechanisms and Physiology of COPI TransportR37GM058615 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI HSU, VICTOR W · 2016 to 2025
$6.0M
Mechanisms of endocytic recyclingR01GM145618 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI VICTOR W HSU · 2023 to 2026
$1.7M
HHS | NIH (NIH) R01GM145618HHS | NIH (NIH) R35GM122510HHS | NIH (NIH) R37GM058615MOST | National Key Research and Development Program of China (NKPs) 2021YFF0704300MOST | National Natural Science Foundation of China (NSFC) 31670744MOST | National Natural Science Foundation of China (NSFC) 31925026MOST | National Natural Science Foundation of China (NSFC) 31961160723MOST | National Natural Science Foundation of China (NSFC) 32371248National Research Foundation of Korea (NRF) 2021R1A6A1A10042944National Research Foundation of Korea (NRF) RS-2023-00208127National Research Foundation of Korea (NRF) RS-2023-00260454National Research Foundation of Korea (NRF) RS-2024-00344154NIGMS NIH HHS R01 GM145618NIGMS NIH HHS R35 GM122510NIGMS NIH HHS R37 GM058615Research Grants Council, University Grants Committee () C6021-19EResearch Grants Council, University Grants Committee () N_CityU104/19Samsung Science and Technology Foundation (SSTF) SRFC-MA2402-13
6 · The paper itself

Abstract

ADP-Ribosylation Factor (ARF) small GTPases have been found to act in vesicle fission through a direct ability to tubulate membrane. We have pursued cryoelectron microscopy (EM) to reveal at 3.9 Å resolution how ARF6 assembles into a protein lattice on tubulated membrane. Molecular dynamics simulation studies confirm and extend the cryo-EM findings. The ARF6 lattice exhibits features that are distinct from those formed by other membrane-bending proteins. We identify protein contacts critical for lattice assembly and how membrane insertion results in constricted tubules. The lattice structure also enables docking by GTPase-activating proteins (GAP) to achieve vesiculation. We have also modeled ARF1 onto the ARF6 lattice, and then pursued vesicle reconstitution by the Coat Protein I (COPI) complex to further confirm that the ARF lattice acts in vesicle fission. By elucidating how an ARF protein tubulates membrane at the structural level, we have advanced the molecular understanding of how this class of transport factors promote the fission stage of vesicle formation.

Indexed as

ADP-Ribosylation FactorsCell MembraneADP-Ribosylation Factor 1ADP-Ribosylation Factor 6Coat Protein Complex ICryoelectron MicroscopyGTPase-Activating ProteinsHumansMolecular Dynamics SimulationADP-Ribosylation Factor 1ADP-Ribosylation Factor 6ADP-Ribosylation FactorsARF6 protein, humanCoat Protein Complex IGTPase-Activating ProteinsARF small GTPaseCOPI vesicle formationcryo-electron microscopyhelical reconstructionmembrane fission

Identifiers

PMID40117306
PMCPMC11962421

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.