ArticleGigaScience2025
How to select predictive models for decision-making or causal inference.
Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
3 citing papers in PubMed.
- NanoBind: Mechanism-Driven Deep Learning of Nanobody-Antigen Molecular Recognition.Research (Washington, D.C.) · 2026Article
- Step-by-step causal analysis of EHRs to ground decision-making.PLOS digital health · 2025Article
- How to select predictive models for decision-making or causal inference.GigaScience · 2025Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundWe investigate which procedure selects the most trustworthy predictive model to explain the effect of an intervention and support decision-making.
methodsWe study a large variety of model selection procedures in practical settings: finite samples settings and without a theoretical assumption of well-specified models. Beyond standard cross-validation or internal validation procedures, we also study elaborate causal risks. These build proxies of the causal error using "nuisance" reweighting to compute it on the observed data. We evaluate whether empirically estimated nuisances, which are necessarily noisy, add noise to model selection and compare different metrics for causal model selection in an extensive empirical study based on a simulation and 3 health care datasets based on real covariates.
resultsAmong all metrics, the mean squared error, classically used to evaluate predictive modes, is worse. Reweighting it with a propensity score does not bring much improvement in most cases. On average, the $R\text{-risk}$, which uses as nuisances a model of mean outcome and propensity scores, leads to the best performances. Nuisance corrections are best estimated with flexible estimators such as a super learner.
conclusionsWhen predictive models are used to explain the effect of an intervention, they must be evaluated with different procedures than standard predictive settings, using the $R\text{-risk}$ from causal inference.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.