Evidence map›Paper›PMID 40117098›Full record

ArticleHLA2025

The Case of a Missing HLA-B Gene.

Noah Cline, Dario Merlo, Sandra Frater, Nicholas R Pollock, Neema P Mayor, Thomas R Turner, Lisa Walsh, Sharon Vivers, Paul J Norman

Abstract readCase Reports
In one paragraph

Article in HLA, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Noah ClineDepartment of Biomedical Informatics, University of Colorado School of Medicine, Aurora, Colorado, USA.ORCID 0009-0002-2389-9699
Dario MerloAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Sandra FraterAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Nicholas R PollockDepartment of Biomedical Informatics, University of Colorado School of Medicine, Aurora, Colorado, USA.
Neema P MayorAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Thomas R TurnerAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Lisa WalshAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Sharon ViversAnthony Nolan Research Institute, Royal Free Hospital, London, UK.
Paul J NormanDepartment of Biomedical Informatics, University of Colorado School of Medicine, Aurora, Colorado, USA.

Funding

Insights Into Immune-Related Diseases Born from Population GenomicsU01AI090905 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Paul John Norman · 2010 to 2026
$10.9M
Anthony Nolan CharityNational Institutes of Health of the USA U01AI090905NIAID NIH HHS U01 AI090905
6 · The paper itself

Abstract

The Major Histocompatibility Complex (MHC) of human chromosome 6 contains multiple genes critical for immunity. The exceptional polymorphism of this genomic region that establishes and maintains immune diversity can be technically challenging to characterise and analyse. In this study, we present a family where the mother and one of her children have no HLA-B allele in common, implying the absence of HLA-B from the maternal haplotype. Homozygosity of the mother and child was confirmed using three independent PCR-based methods and high throughput DNA sequencing. Through probe-based MHC region enrichment, sequencing, and read mapping, we located the breakpoints of a large (36.5 kbp) deletion encompassing the entire HLA-B gene. Accordingly, the deletion was present on the maternal haplotype and transmitted to the child. This study demonstrates strategies for locating large deletions in complex genomic regions and highlights the dynamic nature of MHC structure and variation.

Indexed as

Chromosomes, Human, Pair 6HLA-B AntigensSequence DeletionAllelesFemaleHaplotypesHigh-Throughput Nucleotide SequencingHomozygoteHumansMalePedigreeSequence Analysis, DNAHLA-B AntigensHLAMHCnext‐generation sequencingstructural variation

Identifiers

PMID40117098
PMCPMC11932453

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.