Evidence map›Paper›PMID 40116496›Full record

ArticlemSystems2025

ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in

Patrice Baa-Puyoulet, Léo Gerlin, Nicolas Parisot, Sergio Peignier, François Renoz, Federica Calevro, Hubert Charles

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Patrice Baa-PuyouletINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0002-7033-7245
Léo GerlinINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0002-1398-2790
Nicolas ParisotINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0001-5217-8415
Sergio PeignierINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0002-9004-3033
François RenozBiodiversity Research Centre, Earth and Life Institute, UCLouvain, Louvain-la-Neuve, Belgium.ORCID 0000-0003-3716-4562
Federica CalevroINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0001-7856-9617
Hubert CharlesINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.ORCID 0000-0002-0809-4705

Funding

Agence Nationale de la Recherche ANR-16-CE02-0014Agence Nationale de la Recherche PrANR-21-CE35-0011
6 · The paper itself

Abstract

Most arthropods live in close association with bacteria. The genomes of associated partners have co-evolved, creating situations of interdependence that are complex to decipher despite the availability of their complete sequences. We developed ArtSymbioCyc, a metabolism-oriented database collection gathering genomic resources for arthropods and their associated bacteria. ArtSymbioCyc uses the powerful tools of the BioCyc community to produce high-quality annotations and to analyze and compare metabolic networks on a genome-wide scale. We used ArtSymbioCyc to study the case of the tripartite symbiosis of the cereal aphid

Indexed as

AphidsArthropodsBacteriaDatabases, FactualMetabolic Networks and PathwaysSymbiosisAmino AcidsAnimalsAmino Acidsamino acidsAphididaeBuchnera aphidicoladatabaseinsectsmetabolic networkmetabolismSerratia symbioticasymbiosisvitamins

Identifiers

PMID40116496
PMCPMC12013274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.