Evidence map›Paper›PMID 40116283›Full record

ReviewProtein science : a publication of the Protein Society2025

Computational studies on the functional and structural impact of pathogenic mutations in enzymes.

Upeksha C Dissanayake, Arkanil Roy, Yazdan Maghsoud, Sarthi Polara, Tanay Debnath, G Andrés Cisneros

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Upeksha C DissanayakeDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, Texas, USA.ORCID 0000-0002-6991-3452
Arkanil RoyDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, Texas, USA.
Yazdan MaghsoudDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, Texas, USA.
Sarthi PolaraDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, Texas, USA.
Tanay DebnathDepartment of Physics, The University of Texas at Dallas, Richardson, Texas, USA.
G Andrés CisnerosDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, Texas, USA.

Funding

National Science Foundation ACCESS BIO240365National Science Foundation OAC-2117247NIH HHS R35GM15195University of Texas at Dallas' Cyberinfrastructure and Research Services, Ganymede and Titan HPC clusters
6 · The paper itself

Abstract

Enzymes are critical biological catalysts involved in maintaining the intricate balance of metabolic processes within living organisms. Mutations in enzymes can result in disruptions to their functionality that may lead to a range of diseases. This review focuses on computational studies that investigate the effects of disease-associated mutations in various enzymes. Through molecular dynamics simulations, multiscale calculations, and machine learning approaches, computational studies provide detailed insights into how mutations impact enzyme structure, dynamics, and catalytic activity. This review emphasizes the increasing impact of computational simulations in understanding molecular mechanisms behind enzyme (dis)function by highlighting the application of key computational methodologies to selected enzyme examples, aiding in the prediction of mutation effects and the development of therapeutic strategies.

Indexed as

Computational BiologyEnzymesMolecular Dynamics SimulationMutationHumansMachine LearningProtein ConformationEnzymescomputational toolsdiseasesenzymesmutationssimulations

Identifiers

PMID40116283
PMCPMC11926659

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.