Evidence map›Paper›PMID 40116085›Full record

ArticleProteins2025

PCANN Program for Structure-Based Prediction of Protein-Protein Binding Affinity: Comparison With Other Neural-Network Predictors.

Olga O Lebedenko, Mikhail S Polovinkin, Anastasiia A Kazovskaia, Nikolai R Skrynnikov

Abstract readComparative Study
In one paragraph

Article in Proteins, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Olga O LebedenkoLaboratory of Biomolecular NMR, St. Petersburg State University, St. Petersburg, Russia.
Mikhail S PolovinkinLaboratory of Biomolecular NMR, St. Petersburg State University, St. Petersburg, Russia.
Anastasiia A KazovskaiaLaboratory of Biomolecular NMR, St. Petersburg State University, St. Petersburg, Russia.
Nikolai R SkrynnikovLaboratory of Biomolecular NMR, St. Petersburg State University, St. Petersburg, Russia.ORCID 0000-0002-7097-9192

Funding

Saint Petersburg State University 127400313
6 · The paper itself

Abstract

In this communication, we introduce a new structure-based affinity predictor for protein-protein complexes. This predictor, dubbed PCANN (Protein Complex Affinity by Neural Network), uses the ESM-2 language model to encode the information about protein binding interfaces and graph attention network (GAT) to parlay this information into

Indexed as

Computational BiologyNeural Networks, ComputerProteinsSoftwareAlgorithmsBinding SitesDatabases, ProteinDeep LearningHumansProtein BindingProtein ConformationProteinscomparison of Kd predictorsdeep learningESM‐2 language modelgraph attention networkKd prediction programprotein binding databasesprotein–protein binding

Identifiers

PMID40116085
PMCPMC12314579

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.